Agrococcus sp. Marseille-Q4369: JSQ78_11890
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Entry
JSQ78_11890 CDS
T09684
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
agro
Agrococcus sp. Marseille-Q4369
Brite
KEGG Orthology (KO) [BR:
agro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agro03032
]
JSQ78_11890 (topA)
03400 DNA repair and recombination proteins [BR:
agro03400
]
JSQ78_11890 (topA)
Enzymes [BR:
agro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JSQ78_11890 (topA)
DNA replication proteins [BR:
agro03032
]
Prokaryotic type
DNA Topoisomerases
JSQ78_11890 (topA)
DNA repair and recombination proteins [BR:
agro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JSQ78_11890 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
HC2
Toprim_2
VbhA
Motif
Other DBs
NCBI-ProteinID:
QUW18492
LinkDB
All DBs
Position
2355207..2357930
Genome browser
AA seq
907 aa
AA seq
DB search
MSMGKKLVIVESPAKGKTIERYLGEGYQVLASVGHIRDLVSPRDLPADLKKGAFGKFAVD
VDNGFAPYYVVSDEKKKTVSELKKALKDADELILATDEDREGEAIAWHLLEVLKPKVPVK
RMVFHEITKDAIEQAKDQMRELNMPLVDAQETRRILDRLYGYEVSPVLWRKVRQGLSAGR
VQSPTARLIVDRERERMAFVPAAYWSLAAQFEAPQSTTQGSRFGARLVRLDGARVATGSD
FDDRGQIKGVRTILDQEAAESLASELERAAFQVASVESKPYRRRPSAPFTTSTLQQEAGR
KLKLSAKQTMSVAQSLYEQGYITYMRTDSPSLSAQAIKAAREQATALYGKGSIPQAARHY
SGKSKSAQEAHEAIRPSGDAFRTPAEVKASLTPNEHRLYELIWKRTVASQMIDATGQTAT
ITIASEKTSRGVAEFTASGTVITEPGFLHAYEEGKDASRYAEDAEGDGNLPDVKQSDPVS
LVELERKDHVTTPPPRYTEASLVKALEELEIGRPSTYASIIDTIVRRGFVTQRGGALVPN
WIAFSTIKLLEDNLGDYVDYDFTAEMLADLDRIADGDLDRQEWLRRFYFGSEERPGLKST
VENLGDIDARAVNSIPVAEGVTLRVGQYGPYLEGTGPDGEVKRANIPEDLTPDQLTPEKA
AELFAAEPAEDRVLGQHPETGLDVVVKNGRFGPYIEEALPVELDDEGKPVAPKKGKAAPK
PRRASLFKSMEPESVDLPTALKLLSLPRVVGVDPESGEEISARPGRYGPFLSKGTDTRSL
EDEDQIFSITLEQALERFAQPKYGARKAASALKEFDADPVSGKPVKVRDGRFGPYVTDGE
TNATIPRGEDVEGITFERAIELLQLKREKGPAKKPARKPAAKKPAAKKPAAKKAPAKKPA
AKKPTES
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatgggcaagaagctcgtcatcgtcgagtccccggcgaagggaaagacgatcgag
cggtacctcggcgagggctaccaggtgctggcctccgtcggccacatccgcgacctcgtg
agcccccgagacctgcccgccgacctcaagaagggcgccttcggcaagttcgccgtcgac
gtcgacaacggcttcgcgccctactacgtcgtgagcgacgagaagaagaagaccgtctcc
gagctcaagaaggcgctcaaggacgccgacgagctcatcctcgcgacggatgaggaccgc
gagggcgaggccatcgcgtggcatctgctcgaggtgctcaagcccaaggtgccggtgaag
cgaatggtgttccacgagatcaccaaggacgcgatcgagcaggccaaggaccagatgcgc
gagctcaacatgccgctcgtcgacgcgcaggagacgcgccgcatcctcgaccggctctac
ggctacgaggtgagccccgtgctgtggcgcaaggtgcggcagggcctgtcggccggtcgc
gtgcagtcgccgaccgcgcgcctcatcgtcgatcgcgagcgcgagcgcatggcgttcgtg
cccgccgcctactggagcctcgcggcgcagttcgaagcccctcagtcgacgacgcaggga
tcgcgcttcggcgcccggctcgtacggctcgacggcgcgcgcgtcgcgaccggcagcgac
ttcgacgaccgcggccagatcaagggcgtccgcacgatcctcgaccaggaggccgccgag
tcgctcgcgagcgagctcgagcgggccgccttccaggtcgcgagcgtcgagtcgaagccc
taccgccgtcgcccctcggcgcccttcacgacctcgaccctccagcaggaggccggccgc
aagctcaagctctcggcgaagcagacgatgtcggtcgcgcagtcgctgtacgagcagggc
tacatcacctacatgcgcaccgactcgccctcgctctcggcgcaggcgatcaaggcggcg
cgcgagcaggcgacggcgctctacggcaagggatcgatcccgcaggccgcgcgccactac
tcgggcaagtcgaagtcggcgcaggaggcgcacgaggcgatccgcccctcgggcgacgcc
ttccgcaccccggccgaggtcaaggcatccctcaccccgaacgagcaccgcctctacgag
ctcatctggaagcgcaccgtcgcgagccagatgatcgatgcgacgggtcagaccgcgacc
atcacgatcgcctcggagaagacgagccgcggggtcgccgagttcaccgcgtccggcacc
gtcatcaccgagcccggcttcctgcacgcctacgaggagggcaaggacgcctcgcgctac
gcagaggacgccgagggcgacgggaacctgccggacgtcaagcagtccgaccccgtctcg
ctcgtcgagctcgagcgcaaggaccacgtcacgacgcccccgccgcgctacaccgaggcg
agcctcgtcaaggcgctcgaggagctcgagatcggccgcccgtcgacctacgcctcgatc
atcgacaccatcgtgcggcgcggcttcgtcacgcagcgcggcggcgcgctcgtgccgaac
tggatcgcgttctcgaccatcaagctgctcgaggacaacctcggcgactacgtcgactac
gacttcacggccgagatgctcgccgacctcgaccgcatcgccgacggtgacctcgaccgg
caggagtggctgcgccgcttctacttcggcagcgaggagcggccgggcctcaagagcacg
gtcgagaacctcggcgacatcgacgcgcgcgccgtcaactcgatcccggtggccgagggc
gtcacgctgcgcgtcggccagtacgggccctacctcgagggcacagggcccgacggcgag
gtcaagcgcgccaacatccccgaggacctcacgcccgaccagctcacgcccgagaaggcg
gcggagctcttcgcggccgagcccgcggaggaccgcgtgctcgggcagcaccccgagacg
gggctcgacgtcgtcgtcaagaacggccgcttcggcccgtacatcgaggaggcgctgccg
gtcgagctcgacgacgagggcaagcccgtcgcgcccaagaagggcaaggccgcgccgaag
ccgcgccgcgcctcgctcttcaagtcgatggagcccgagtcggtcgacctgccgacggcg
ctcaagttgctctcgctcccgcgcgtcgtgggcgtcgaccccgagtcgggcgaggagatc
tcggcccgcccgggtcgctacggcccgttcctctcgaagggcaccgacacccgctcgctc
gaggacgaggaccagatcttctcgatcacgctcgagcaggcgctcgagcgcttcgcgcag
ccgaagtacggggcgcggaaggccgcgagcgcgctcaaggagttcgacgccgacccggtc
tcgggcaagcccgtgaaggtgcgcgacggccgcttcgggccctacgtcaccgacggcgag
acgaacgcgaccatcccgcgcggcgaggacgtcgagggcatcaccttcgagcgcgcgatc
gagctgctgcagctcaagcgcgagaagggcccggcgaagaagcccgcgcgcaagcccgcc
gcgaagaagccggccgccaagaagccggccgcgaagaaggcgcccgcgaagaagcccgcg
gcgaagaagcccaccgagtcgtga
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