Agrococcus sp. Marseille-Q4369: JSQ78_12560
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Entry
JSQ78_12560 CDS
T09684
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agro
Agrococcus sp. Marseille-Q4369
Pathway
agro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JSQ78_12560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agro03400
]
JSQ78_12560 (mfd)
Enzymes [BR:
agro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JSQ78_12560 (mfd)
DNA repair and recombination proteins [BR:
agro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JSQ78_12560 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QUW20225
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All DBs
Position
2508154..2511618
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AA seq
1154 aa
AA seq
DB search
MRAPVVASLASGSSRPLLVITATRREADAVRDDLEAWLPSAQVLTLPAWETLPHERLSPS
AETVGQRGAALRAVAERDPATPTVVIASVRAALQPVADNLLDIEPVELVAGARGVDLAEL
SRRLVDLAYLRVDMVTRRGEFAVRGGIVDVFSPAADHPVRIELFGDEVEQMRWFHVADQR
SDPTPLERVVLPPSRELLLTDAVRARARQLAPEFPGIAQMLEKIAEGIPVEGMESLAPAL
LPRLVPVTHYLPDAGVVVLGPERIRDRVASLNETNQEFLQAAWSAATAGGEAPVDLSSGF
LSLDELHDAVDGPWWTLSTLQADESVDAIDAHAVPSFAGRADGAVEHLRERTRDGWRVVV
TAAGHGMVERAVQVLGEHGVAAREVDALPAELEPGIVHVTRAAIEHGFSLPEERVELVSE
AEFFGRAVGVDSRQPHKLAGRRRSVVDPLQLKAGDYVVHETHGVGRFVELTQRTVSSGGR
NPVKTTREYLVIEYAPSKRGQPGDRLSVPTDQLDQLNRYVGGEAPQLSKMGGSDWQQAKS
KARRAVRDIAVELVQLYSKRMASRGRAFGPDSPWQRELEDAFPYAETPDQLTTIDEVKRD
MERPVPMDRLLSGDVGYGKTEVAVRAAFKAVQDGTQVAVLVPTTLLVRQHFETFAARFAG
FPVQVRALSRFQTDKEVRETMKGIADGTVDVVIGTHRILGESVHFKELGLVIIDEEQRFG
VEHKEKLKALKANVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEARHPVLTFVGAYNE
QQVAAAIRRELLREGQVFFVHNRVSSINRVAAQLAELVPEARIGVAHGKMAESQLERVIV
DFWEKEYDVLVSTTIVETGLDIPNANTLIVDRAERYGLSQLHQLRGRVGRGRERAYAYFL
YDADKPLSETAHDRLETIAVHNELGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLY
LRMVGEAVAVFRGEEDEGPRELRLELPVDAVIPEDYVDSERLRLEAYQKISAAASARDDG
AIDQVLDELRDRYGEPPAQVTSLIAIARLRRKAQRAKLSEVITVGPNLRVSPAELAESTQ
LRLRRMYPGAKLNAQAATLVVPIPTAGGGRLAGTQAEPLPDAELIAWVDALLAAIFPPPK
EPSSPPADDGTASA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcaccggtcgtcgcctcgctcgcgagcggctcctcccgcccgctgctcgtcatc
accgcgacccggcgcgaggccgatgccgtgcgcgacgacctcgaggcctggctgccgagc
gcgcaggtgctcacgctccccgcgtgggagacgctcccgcacgagcgattgagcccgtcg
gccgagaccgtcggccagcgcggcgcagcgctccgcgcggtcgctgagcgcgaccccgca
acgccgaccgtcgtcatcgcctcggtgcgcgccgcgctgcagccggtcgccgacaacctg
ctcgacatcgagccggtcgagctcgtcgcgggcgctcgcggcgtcgacctcgccgagctc
tcgcgccggctcgtcgacctcgcctacctgcgcgtcgacatggtcacccgccgcggcgag
ttcgccgtgcgcggcggcatcgtcgacgtcttcagccccgccgccgaccaccccgtgcgc
atcgagctcttcggcgacgaggtcgagcagatgcgctggttccacgtcgccgaccagcgc
agcgacccgacgcccctcgagcgggtcgtgctgcccccgagccgcgagctgctgctgacg
gatgcggtgcgcgcgcgggcgcgccagctcgcccccgagttccccggcatcgcgcagatg
ctcgagaagatcgcggagggcatcccggtcgagggcatggagtcgctcgcgcccgcgctg
ctgccgcggctcgtgccggtgacccactacctgcccgacgcgggcgtcgtcgtgctcggg
cccgagcgcatccgggatcgcgtcgcgagcctgaacgagaccaaccaggagttcctgcag
gccgcgtggagcgccgcgaccgcgggcggggaggcgcccgtcgacctcagcagcggcttc
ctgagcctcgacgagctgcacgacgcggtcgacggcccgtggtggacgctctcgaccctg
caggccgacgaatcggtcgacgcgatcgacgcgcacgccgtgccgagcttcgccggccgc
gccgatggcgccgtcgagcacctccgcgagcgcacgcgcgacggctggcgcgtcgtcgtc
accgcggccggccacggcatggtcgagcgcgccgtgcaggtgctcggcgagcacggcgtc
gccgcgcgcgaggtcgacgcgctgcccgccgagctcgagcccggcatcgtgcacgtcacg
cgggctgcgatcgagcacggcttctcgctgcccgaggagcgcgtcgagctcgtgagcgaa
gccgagttcttcggccgcgcggtcggcgtcgacagccgccagccgcacaagctcgccggc
cgccgccgctcggtcgtcgacccgctgcagctcaaggcgggcgactacgtcgtgcacgag
acgcacggcgtcggccgcttcgtcgaactcacccagcgcaccgtctcgagcggcgggcgg
aaccccgtcaagacgacgcgcgagtacctcgtgatcgagtacgcgccctcgaagcgcggc
cagccgggcgaccggctctcggtgccgaccgaccagctcgaccagctgaaccgctacgtc
ggcggcgaggcgccgcagctgtcgaagatgggcggcagcgactggcagcaggcgaagtcg
aaggcgcggcgggccgtgcgcgacatcgcggtcgagctcgtgcagctctactcgaagcgg
atggcctcgcgcggccgcgcgttcggccccgactcgccgtggcagcgcgagctcgaggac
gccttcccgtacgccgagacgcccgaccagctgacgacgatcgacgaggtcaagcgcgac
atggagcggccggtgccgatggaccggctgctctcgggcgacgtcggctacggcaagacc
gaggtcgcggtgcgcgccgcgttcaaggccgtgcaggacggcacgcaggtcgccgtgctc
gtgccgacgacgctgctcgtgcggcagcacttcgagaccttcgccgcccggttcgccggc
ttcccggtgcaggtgcgcgcgctcagccgcttccagaccgacaaggaggtgcgcgagacg
atgaagggcatcgccgacggcaccgtcgacgtcgtcatcggcacccaccgcatcctcggg
gagtccgtgcacttcaaggagctcgggctcgtcatcatcgacgaggagcagcgcttcggc
gtcgagcacaaggagaagctcaaggcgctcaaggccaacgtcgacgtgctcgcgatgtcg
gcgacgcccatcccgcgcacgctcgagatggcggtcacgggcatccgcgagatgtcgacg
ctcgcgacgccgcccgaggcgcgccaccccgtgctgaccttcgtcggcgcctacaacgag
cagcaggtcgccgcggcgatccgccgcgagctgctgcgcgagggccaggtcttcttcgtg
cacaaccgcgtctcgtcgatcaaccgcgtcgcggcgcagctcgcggagctcgtgcccgag
gcacgcatcggcgtcgcccacggcaagatggccgagtcgcagctcgagcgcgtcatcgtc
gacttctgggagaaggagtacgacgtgctcgtctccaccacgatcgtcgagacagggctc
gacatcccgaacgcgaacacgctcatcgtcgatcgcgccgagcgctacggcctcagccag
ctgcaccagctgcgcgggcgcgtcggccgcggccgtgagcgcgcctacgcctacttcctc
tacgacgccgacaagcccctctccgagacggcgcacgaccggctcgagacgatcgcggtg
cacaacgagctcggcgcgggcatgcaggtcgcgatgaaggacctcgagatccgcggcgcg
ggcaacctgctcggcggcgagcagtcggggcacatcgcgggcgtcggcttcgacctctac
ttgcggatggtcggggaggccgtcgcggtcttccgcggcgaggaggacgagggcccgcgc
gagctgcggctcgagctgcccgtcgacgccgtgatccccgaggactacgtcgattccgag
cggctgcggctcgaggcgtaccagaagatctctgccgcggcctcggcgcgcgacgacggc
gcgatcgaccaggtgctcgacgagctgcgcgaccgctacggcgagccgcccgcgcaggtg
acgtcgctcatcgcgatcgcgcggctgcggcgcaaggcccagcgcgcgaagctctcggag
gtcatcaccgtcggccccaacctgcgcgtctcgcccgccgagctcgcggagtcgacgcag
ctgcggctgcgccgcatgtacccgggggcgaagctcaacgcgcaagcggccacgctcgtc
gtgccgatcccgaccgcgggcggcggccggctcgccggcacgcaggccgagccgctgccc
gacgccgagctcatcgcgtgggtcgatgcgctgctcgcggcgatcttcccgccgccgaag
gagccatcgagcccgcccgccgacgacggcacggcatccgcatga
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