KEGG   Apium graveolens (celery): 141659510
Entry
141659510         CDS       T11340                                 
Name
(RefSeq) 5'-3' exoribonuclease 3-like
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03008  Ribosome biogenesis in eukaryotes
agrv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    141659510
  09123 Folding, sorting and degradation
   03018 RNA degradation
    141659510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:agrv03021]
    141659510
   03019 Messenger RNA biogenesis [BR:agrv03019]
    141659510
   03009 Ribosome biogenesis [BR:agrv03009]
    141659510
   03016 Transfer RNA biogenesis [BR:agrv03016]
    141659510
Transcription machinery [BR:agrv03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     141659510
Messenger RNA biogenesis [BR:agrv03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     141659510
Ribosome biogenesis [BR:agrv03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    141659510
Transfer RNA biogenesis [BR:agrv03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    141659510
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC
Other DBs
NCBI-GeneID: 141659510
NCBI-ProteinID: XP_074322512
LinkDB
Position
5:315779106..315789539
AA seq 1050 aa
MGVPAFYRWLAEKYPMVVVDVIEEEAIEIEGVKIPVDTSKPNPNHLEYDNLYLDMNGIIH
PCFHPEDRPSPTSFTEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFEKEGRKLPPKQESQVCDSNVITPGTEFMAVLSVALQYYIHL
RINNDPGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLA
LATHEIHFSILREVVFTPGQQNKCFLCGQMGHMAADCEGKAKRKNGEFDEKGEIVPKKPY
QFLHIWTLREYLELEMRIPNIPFKVDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAIN
LLLAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFSKRVRLHQRQAERVKRD
KAQVKRGDDAEPQIKPDMVPVARFHGSRLASGHAPSPYQHTQSSNQRASKVARLSSEATI
AAALVEAENNLENEASENKEELKIKLKGILREKSDAFNSENPEEDKVKLGEPGWKERYYE
EKFSAKTPEELDRVRKDVVKSYAEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQ
LNISFELGSPFKPFNQLLGVFPAASSHALPQQYRKLMTDPNSPIIDFYPADFEVDMNGKR
FAWQGIAKLPFIDEARLLAEVAKIEYTLTDEEVRRNSTMNDMFFVAVSHPLSPYIFSLDD
RCKQLNDKERTQLTEKIDPGASGGMNGYISLCSGEPCPQIFRSPVEGMEDIMDNNVICAI
YRLPDYHDHIAHPPPGVRLPKKTVSVGDLTPDPVLWHEDSGRKPWENRRNNPPGAISGRQ
LGDAAHRLVANSLQVKKDRNVDGDYNGHPPYATAHGLAFESNQSNRHQGQGQYRSVPPNS
AYPQGHHMLPYSVPGQSQYDRSHNQPYASSSTRHSNNRHHPPSNQSRDYPPQVYYSQGSH
QNRYVYQPHAPLHTVQALPPVAAGVPFYQHVGYQTYVGANYHHPNRGPPTLDSRVGRDYV
RHEKFGNQFSALGIGRGVRRPPPPPPGHRH
NT seq 3153 nt   +upstreamnt  +downstreamnt
atgggagttccagcattctaccggtggttagcggagaagtatccgatggtagttgtagat
gtaattgaagaagaagcaattgaaattgaaggtgttaagattcctgttgatacttctaaa
cctaatcctaatcaccttgaatatgataatctctatctcgatatgaatggtatcattcac
ccctgttttcaccccgaggaccggccttctccaacctccttcactgaggtgtttcagtgt
atgttcgattacatcgataggctgtttgtgatggtgcgtcctagaaagctcctctacatg
gctatagatggtgttgccccaagggcaaaaatgaaccagcagcgatctaggcgttttaga
gcagccaaagatgcagcagatgcggcagctgaagaggaaagattgcgcgaggaatttgaa
aaggaaggcagaaagcttcccccaaaacaggagtctcaagtttgtgattctaatgttata
actcctggaactgagtttatggcagttttatcagttgctctacagtattatatccatctc
agaattaacaatgaccctggatggaaatctgtaaaggttatactttctgatgcaaatgtt
cctggcgaaggggaacacaaaattatgtcctacattcgtcttcaaagaaaccttcctggt
tttgatccaaacacacgccactgcctgtatggtttggacgctgatctcatcatgttggct
ctggctacccatgagattcatttttcaattctcagggaggttgtattcactccaggacag
caaaacaagtgttttctttgtggtcaaatgggccacatggccgcagattgtgaagggaag
gctaaaaggaagaatggcgagtttgatgagaaaggtgaaattgttcccaaaaagccatac
cagtttctccacatttggactctcagggagtatttggaacttgagatgaggattcctaat
attcctttcaaagttgattttgagcgtatcgttgatgatttcatcttcatgtgtttcttt
gttggaaatgattttttaccacatatgcctacattggagatccgtgagggtgcaatcaat
ctgcttttggctgtttacaagaaagaattccgggctttaggtggttatttgactgatgga
agcaagccaaacttgagcagggtggagcatttcattcaagccgtgggatcatatgaggac
aaaatctttagtaaaagagttcggttgcatcagcgtcaagccgagagagtcaagcgtgat
aaagctcaagtgaaaagaggagatgatgcggagccacagatcaaacctgatatggttcca
gttgccaggtttcatggttctcgtctcgcctcagggcatgcaccctcaccatatcagcat
acacaatccagcaaccagcgagcctcaaaagttgcacggctatcttctgaggccactatt
gctgctgctcttgtcgaagctgagaataatcttgaaaacgaggcatctgaaaacaaagag
gaactgaaaataaagttgaaggggatacttcgtgaaaaatctgatgctttcaactctgag
aatcccgaggaagacaaggtaaaactaggagagccaggttggaaggagaggtattatgaa
gaaaagttttctgcaaagactcctgaggaacttgatcgggttcgcaaagacgttgtaaag
agttacgccgaaggtttgtgttgggttatgcactattactacgaaggagtttgttcatgg
caatggttctatccttatcattatgctccatttgcttctgatcttaaagatcttggacag
ttgaatataagctttgaactaggttctccattcaaaccatttaatcagctgttgggagta
tttcctgctgccagctcccatgcacttcctcagcagtacaggaaactgatgactgatcca
aattcgcctattattgatttttatccagctgattttgaagtggatatgaatggtaagaga
tttgcttggcagggtattgccaaattgcccttcattgatgaagcccgccttcttgcagag
gttgcaaaaatcgagtatactttaacggatgaagaagttcggagaaacagtacaatgaat
gacatgttttttgtggcagtatctcaccctctatctccgtacatattttctcttgatgat
cgctgtaaacaattgaatgacaaagaacgaactcaactgacggagaaaattgatccaggg
gccagcggcgggatgaatggttatatatctctttgctctggagaaccgtgcccacaaata
ttcagatcaccagttgaggggatggaagatattatggacaataatgtgatatgtgctatt
tacagacttccagattatcacgatcatattgcacatcctcctccaggagttagactccct
aaaaagaccgtttcagttggggatctaacgccagatcctgttctgtggcatgaagattct
ggaaggaagccatgggaaaatagaaggaataaccctccaggagccatttctggcaggcag
ctaggtgatgctgctcatcggcttgtagcaaatagcttacaggtaaagaaagatagaaat
gttgatggagattataatggccatcctccatatgccactgcacatggcctggcatttgaa
tcgaaccaaagtaatagacaccagggtcagggacagtacagatcggtaccacctaattca
gcttatcctcaaggtcaccacatgttaccatattctgttcctgggcagagtcaatacgat
cgttctcataaccaaccttatgcttcgtcatcaacacgacattctaacaatcggcatcat
cctccttcgaatcagagtagggattatcccccacaagtatattactcccaaggatcgcat
caaaatagatatgtatatcaaccacatgcccctcttcacacagtccaagcactgcctcca
gttgcagccggtgttccattttatcaacatgtcggatatcaaacatacgttggtgccaat
tatcatcacccgaacagaggcccgcccactctagactcaagagtgggcagagattatgta
cgtcatgaaaaatttggcaaccagttttcagcattaggcattggaagaggagttcgaagg
ccaccaccgccaccacctggtcaccgccattaa

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