Apium graveolens (celery): 141661905
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Entry
141661905 CDS
T11340
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141661905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141661905
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
141661905
Complex C
U5 SnRNP specific factors
141661905
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
141661905
NCBI-ProteinID:
XP_074325027
LinkDB
All DBs
Position
5:complement(1762418..1773689)
Genome browser
AA seq
2370 aa
AA seq
DB search
MWNNTGQDMWNSGGLLAPPGTGGGGAILPPGTGGAGGPIPPPPAAQPSYTVLPTPEEAEA
RLEEKARKWMQLNSKRYGDKRKFGFVEPQKEDLPPEHVRKIIRDHGDMSSKKYRHDKRVY
LGALKFVPHAVYKLLENMPMPWEQVREVKILYHITGAITFVNEIPWVVEPIYLAQWGTMW
IMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVHTWFY
DHKPLVKTKLINGPSYRKWHLSLPIMATLHRLSGQLLSDLIDRNYFYLFDMESFFTAKAL
NMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKL
CIYHTPMIMYIKTEDPDLPAFYFDPLIHPITSTNKDRQRDRKISEEDDDDFCLPEGVEPL
LRSTPIYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWFKEHCPPTYPVKVRVSY
QKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTQLDWAEAGLQVCKQGYNMLNLL
IHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLG
NVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGC
GFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRA
AVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKA
DWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAV
AIYTTTVHWLESRKFSPIQFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLI
EQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLW
YEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEK
IDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLV
LDLLLLGLTRASEIAGPPQMPNEFITFWDSKVETRHPIRLYSRYIDKVHILFRFTHEEAR
DLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITT
LEWENGFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTA
VAFLRVDDEHMKIFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLD
LLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQT
DVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLE
DLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWN
LNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGL
NQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIH
ESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVA
ESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLD
LAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQ
NYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSV
WAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKG
SELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVN
NEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSE
IRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKTTNVHGDSLIVTTTSPYEQAA
FGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICVADLRTQIAG
YLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHEFLNDLEPLGWMHTQPNELP
QLSPQDLTSHAQILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPTGYEWGRANKDTGS
NPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTKIMKYGIKLGTPREYYH
EDHRPTHFLEFSNMEEGEITAVGDREDTFT
NT seq
7113 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaatactggacaagatatgtggaacagcggcggtcttcttgcgccgccggga
acaggtggcggtggagcgatacttcctccgggaaccggcggagctggcggtcctataccg
cctccgccggcggcgcaaccgtcgtatactgtgcttccgacgccggaagaagctgaagct
aggttagaagagaaggcgaggaagtggatgcagttgaactccaagaggtatggagataag
cgcaagtttgggttcgttgagccgcagaaggaggatttgcctcccgagcatgttaggaag
attattcgagatcatggtgacatgtcatctaaaaaatatcggcatgacaaacgtgtgtat
cttggagctcttaagtttgttcctcatgcagtctacaagcttctggaaaatatgccaatg
ccttgggagcaggtgcgtgaggtgaagattttgtaccatattactggagctatcacattt
gtgaacgaaataccgtgggtggttgaaccgatttatctagctcagtggggtacaatgtgg
ataatgatgagaagagagaagcgggatcgtcggcatttcaagagaatgcgatttcctcct
tttgatgatgaggagcctccgctggattatgctgataatcttctcgacgtggaccctctg
gagcctatccaattagagttggatgaggaagaggattccgctgtgcatacatggttttat
gaccacaagcctctcgtgaaaacaaagcttattaatggccccagttacaggaaatggcac
ctttcacttcctataatggctacactccatcgactttcagggcagttactttctgatttg
attgatcggaattacttctacttgtttgatatggagtcgttctttacagccaaagccctc
aatatgtgcattcctggtgggcctaagtttgaacccttataccgtgacatggagaaaggg
gatgaagattggaatgaattcaatgatattaacaaacttattattagatcaccacttagg
actgagtacagaattgctttccctcatctatataacaataggcccaggaaagtaaagctt
tgtatataccataccccaatgatcatgtacataaaaacggaggatccagatttacctgcg
ttctactttgacccactgattcaccctataacctccacaaacaaggaccgccagcgtgat
aggaaaatttctgaagaggatgatgatgatttctgtttgccggagggagttgaaccactg
cttagaagcaccccaatttacaccgacaccactgctgctggaatctcactgttgtttgcc
ccacgcccttttaacatgaggtccggtcgtatgcgtcgtgctgaagatatacccctggta
tcagaatggttcaaggagcactgccctccgacataccctgttaaagttcgtgtcagctat
caaaagttgttgaaatgttttgttttaaatgagctacatcatcgaccacctaaagctcag
aagaagaaacacttgttcaggtcgctccaagctacaaagttttttcaaaccactcagctt
gattgggctgaagccgggcttcaagtttgtaagcaagggtacaatatgctaaatctgttg
atacacaggaagaatctgaattatcttcatcttgattataattttaacttgaagcctgtg
aagactctcacaactaaagaacgtaagaagtcccggtttggtaatgcttttcatttgtgc
cgtgagatcttgcgtttgacaaagctagttgttgatgccaatatccagtttcgcttgggg
aatgttgatgcgtttcagttggcagatggcctgcagtatacattctcacatgttggccag
ttgactgggatgtatcgttacaagtataggctgatgcgacaaattaggatgtgtaaagat
ttgaagcacttaatctattaccgattcaatacagggccagtggggaagggacctggatgt
ggtttttgggcacctatgtggagggtgtggttgttcttccttcgtggaatagttcctctt
ctggaacgatggctgggaaatttacttgctcgtcaatttgaggggcgtcattcaaaaggg
gtggcaaagacagttactaagcagagagttgaaagtcattttgacttggagcttcgagct
gctgtcatgcatgatgttcttgatgctatgccagagggaattaagcagaacaaagcaaga
accattttgcagcatctaagtgaagcatggcgttgctggaaggcaaatattccttggaag
gtacctggattgccagttccaattgaaaacatgattcttcggtatgtaaagtcaaaagct
gattggtggacaaatgttgcccattataaccgtgaacgtataaggcggggggctactgtt
gacaagacagtctgtaggaaaaatttgggaaggttgactcgtctttggctcaaggcagaa
caggaacgacaacacaattatttgaaagatgggccatatgtcactccagaggaagctgtg
gctatatacaccactactgtgcattggttggaatcaagaaagttttcacctatacagttc
ccacctttgtcatataagcatgacacaaagcttcttatcctcgcccttgaaagattaaaa
gaatcttacagtgtggccgtgaggttgaatcagctgcagagggaagagctgggtctgatt
gagcaggcttatgataatccacatgaggctttatcaaggataaagcgccatctgcttacc
cagcgtgcttttaaagaggtgggaattgagtttatggatctgtatagttacttaatcccg
gtttatgagatcgaacctttggagaagattacagatgcttatcttgatcagtatctgtgg
tacgaaggtgataagcgccatctctttcctaattggattaaaccagcagattcagagcca
ccacccctgctcgtctacaaatggtgtcagggaataaacaatttacaaggtatatgggat
actggtgatgggcaatgtgtagtgatgcttcagaccaagtttgagaaattcttcgagaag
atagatctgaccatgttaaacaggcttctgagattggttcttgaccataatattgctgat
tatgtcactgcgaaaaacaatgttgtgctgtcctacaaggacatgagtcacacaaactct
tatggtcttattcgcggtcttcagtttgcctcctttgttgttcagtattatggtttggtc
ctcgatcttttgctgcttggtttaacccgtgcaagtgaaatcgctggaccgcctcagatg
cccaatgaattcatcactttttgggactctaaagttgaaaccagacacccgatacgattg
tactcaaggtacattgacaaggttcatatattgttcaggtttactcatgaagaggctcga
gaccttattcagcgatatcttactgagcatcccgatcccaacaatgaaaatatggttggg
tataacaataagaagtgctggccaagggatgcaagaatgaggctgatgaagcatgatgtc
aatctggggagaagtgttttctgggatatgaaaaatcgacttccacgtagtatcaccaca
ctggagtgggaaaatggttttgtttctgtctatagcaaggacaatcccaatttgcttttc
agcatgtgtggatttgaggtccgtattcttcccaagattagaatgactcaagaagcattt
agtaatactcgtgatggagtttggaacttgcaaaatgaacaaacgaaagaacgtacagct
gttgctttcttacgtgtagatgatgaacatatgaagatcttcgagaatcgtgtaaggcaa
atccttatgtcatcaggttcaacaacattcacgaaaatcgtcaacaagtggaataccgct
ttgataggccttatgacatacttccgtgaagcaactgttcatacgcaagaattattagat
ctgctggtcaagtgtgaaaataaaatccagactcgaatcaaaattgggttgaactcaaaa
atgcctagtcgattcccaccagttattttttatacaccaaaagaaattggagggttgggt
atgttatcaatgggtcacatattgattcctcagagtgatcttcgttatagtcagcaaaca
gatgttggcgttacccacttcaggagtggaatgagtcatgaagaagaccagctgattcca
aatctctaccgttacatacagccatgggagagtgaatttattgactcacaacgtgtttgg
gcagagtatgcgctgaagagacaagaagctcagtcacaaaataggcgtttgactcttgag
gatctggaggactcttgggatcgtggtatccctcgtatcaatactttgtttcagaaggat
aggcacactctggcttatgataagggatggagagttaggacagatttcaagcagtatcag
gttcttaaacagaacccattttggtggacacaccagagacacgatggtaaactttggaac
ttgaacaactaccgaactgacgttattcaagcccttggtggtgtagaaggaatccttgaa
catacattgttcaaagggacatacttcccaacttgggaaggtcttttttgggagaaggca
tcaggttttgaggagtcgatgaagtataaaaagctaacaaacgctcagagatctggtctc
aatcaaattcctaaccgtaggttcaccctttggtggtcgcctaccatcaatagagccaat
gtgtatgttggttttcaagtgcagctcgatttgactggaatattcatgcatgggaaaatt
ccgacactcaagatttctcttattcagatattccgtgcccatttgtggcaaaaaattcat
gagagtgttgttatggatctctgccaggttttggatcaagagttggatgcactagaaatc
gagacggtgcaaaaagagaccatacatccaagaaaaagttacaaaatgaacagctcctgt
gccgatatcctcttatttgctgctcataggtggccaatgtcaaagcccagtttggttgcc
gagtcaaaggatgtgtttgatcaaaaagctagcaacaaatattggatagatgtgcaactc
cgttggggtgattatgattctcatgatattgagcgttatactagggcaaagtttatggat
tacacaacagataatatgtctatatatccatctcccactggggtgatgattggccttgat
cttgcttacaacttgcattctgcttttgggaattggttccccgggtcaaaaccacttctt
gctcaggccatgaataagataatgaagtcaaatccagctttgtatgtcctgagggagcgg
ataaggaaagggttgcaattgtattcttcagagcctacagagccatatttgtcatctcag
aattacggggagatatttagtaatcaaattatttggtttgttgatgacacgaatgtgtat
cgtgtcacaatccacaagacatttgagggaaatctgactacgaaaccaattaatggtgcc
atattcatattcaacccaaggacggggcagctttttctaaaggtgatccatactagtgtt
tgggcggggcagaaacgtcttggtcagctagccaagtggaaaacagcagaggaagtagct
gcacttgtgcgatccttgcctgtggaagagcagcccaaacaaatcattgtgacacgtaaa
ggaatgttggatcctcttgaagttcacttgctagattttcctaatattgtcattaaagga
agtgaactgcaacttcctttccaagcatgcttgaagatcgaaaagtttggtgatctgatt
ctgaaagctacagagccgcagatggttttgttcaatatatatgatgattggttgaagagt
atttcatcgtatactgcattttccaggcttatactgatcttgcgtgcccttcatgtgaat
aatgagaaggcaaaaatgttactaaagcctgataagactattatcactgaacctcatcat
atttggccttccctttcagatgatcaatggatgaaggttgaggttgctctgagagacctt
atactctctgattatgccaaaaagaacaatgtgaacacttcagcgctgacgcaatctgaa
attcgtgatattattcttggagctgagatcactccaccctcccaacagcggcagcagata
gctgagattgagaaacaggcgaaagaggcaagtcagttgacagcagtcactacaaagacc
acaaatgtccatggcgattctttaattgtcactaccacaagtccttacgaacaggctgca
ttcgggtccaaaactgattggcgtgttagggcaatttcagcaacaaatctttatcttcga
gtgaatcatatatacgttaattctgaggacataaaggaaacgggttacacatatataatg
ccaaaaaatatattgaaaaagttcatatgcgttgccgatctgcggacgcaaattgcagga
tatttgtatggcgtaagtcctcctgataatcctcaggtgaaggagattcggtgtattgcc
atgccgccacagtgggggacccatcagcaggtacatcttccatcagctcttcctgagcat
gaattccttaatgatctggagccattgggatggatgcacacacagccgaacgagcttcca
cagttatcgcctcaggatctcacatctcatgcccagatcctggagaataacaaacaatgg
gatggagagaagtgcattatactgacttgtagctttactcctggttcctgctctttaact
gcatataagcttacaccaacaggttacgaatgggggcgagcgaataaagatactggcagt
aatcctcatgggtatttacctactcactatgagaaggtccaaatgcttctcagtgaccgt
tttcttggtttctacatggtgcccgataatggtccatggaattacaacttcatgggggta
aagcacacaaagataatgaagtatggaattaagctggggactcctcgcgagtactatcat
gaggatcacagacccacacatttcttggagtttagcaacatggaggagggcgaaatcact
gccgtgggtgaccgtgaggatacatttacataa
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integrated database retrieval system
