Apium graveolens (celery): 141663995
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Entry
141663995 CDS
T11340
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141663995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141663995
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141663995
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
141663995
Complex C
U5 SnRNP specific factors
141663995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
AAA_22
BRR2_plug
AAA_11
Motif
Other DBs
NCBI-GeneID:
141663995
NCBI-ProteinID:
XP_074325952
LinkDB
All DBs
Position
6:5527158..5533844
Genome browser
AA seq
2064 aa
AA seq
DB search
MEEDLGVYRPKGKVSRVAYETMLGLIQRELGGQPLSVVIGAADEVLGVLKDEGLGNVGKR
EGIERVLDRVTDNVFDQFLGIGRGIDDYGGCGDGDGEEGDDCFDEGVGVAVEFAESEEND
FDMVYEEEYEEEDLGDECGLGAMRIGGGIDDQGVEDDEGMALNVQDIDAYWLQRKISQAY
DKQQIDPRQSQKLAEEVLNILAEGGDDRQVETKLLVHLQFDKFSLVKYLLKNRMNIVWCI
RLARAEDQVERKKIEEEMMQLGPELAVILEQLHVTRATEKERQTNLEKSIRQEAHRLKDD
GDQGRRGTPDTDANIMWSKSQCQFLDLECLAFSQGGLFMANRKCELPPGSYRNHNKDYEE
VHVPALKPKPLADGEKLIRVSDMPEWARPAFEGMSQLNRVQSKVYDTALFSAQNLLLCAP
TGAGKTNVAMLTILQQIALNRNEDGSFNHRNYKIVYVAPMKALVAEVVGNLSNRLKHYSV
KVKELSGDQTLTHQQIKETQVIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDKR
GPVLESIIARTVRQVETTKEHTRIVGLSATLPNFEDVALFLRVDLKKGLFHFDNSYRPCP
LAQQYIGITTKKPLQRFRLMNDVCYEKVMSVAGKHQVLIFVHSRKETEKTARAIRDSALT
NDTVSRFLKEESATCEILHEHTALVKSNDLKDLLPYSFAIHHAGLNRADRQIVEELFADG
HIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPELGAWTELSPLDVVQMLGRAGRPQYDTC
GEGIIITGHSELQYYLSVMNQQLPIESQFMSKLVDHLNAEIVLGTVQNAREACNWLSYTY
MYVRMLRNPTLYGLSPDALSKDILLEERRADLVHTAAAILEKNSLIIYDRRNGYFQVTDL
GCTASHYYLSHGTICAYNEHLKPTMGDIELYHLFSSGEEFKYVTVKQDEKMELAKLINRV
PIPIKENLEEPSAKINVLLQAYISRLKLEGLSLTSDMVYISQNAGRLARALFEITLKRGW
AQVAEKALNLFKMVSKRMWTVQSPLRQFQGFPRDFLMKMEKKDLAWERYYDLSSPELSEI
FRFGRMGKALHRCVHQFPKLVLAAHVLPINRTILRVELTVTPDFQWEDNVHGYVEPFWVI
VEDSYAELILHHEYFLLKKQYIDEDHILIFTVPIYEPLHPHYLIRVVSENWIGSQTVLPV
YFKHLILPDKCPPPTELLDLQQLPVTALGNSSYESLYQEFKHFNPVQTQVFTVLYNTDDN
VLVAAPTGSGKTICAEFAILRYHQKSHDTFMRAVYIAPIESLAKERCNDWNRKFGEGLGM
RVVELTGETAVDLKLLEKGQLVISTPDKWDALSRRWRKRKHVREVGLFIVDELHLIGGQG
GPILEVIVSRMRYIASEVDYKIRIVALSTSLANAKDLGEWIGATSHGLFNFLPSVRPVPL
DIHIQGVDITNFEARMQAMTKPTYASIVKHAKSGQPAIVFVPTRKHARLTAVNFMTYFSV
ETGESPMFIRRSMKELEPFVDKIHEAMLRKTVQYGVGYLHEGLTSTDQDVVRTLFETGWI
QVCVISSSMCWGLQLRSHLVIIMGTQYHDGRGNAHNDYPVTDILQMMGQASRPLIDNSAK
CVIFCHAPRKEYYKKFLHKAFPVESSLHHFLHDIFNAEVVEQLITSKQDAVDYLTWTFMY
RRLTQNPSYYNLQGVSQRHLSDHLSELVENTFSDLETSECVAIEDDLYISPRSLGMIASF
YYVSPTTVERFNYLLTVETKLKGLLQILASAAEYEELPIRPGDEQLIQRLINHQRFSFYN
PKCTDPHVKAYSLLQAHFSRKLVGGTLAADQKKVLLSASRLLQTMIDVASTHGWLSLALL
GMKVSQMVTQGMWEHDSELLQLPYFTKELAKRCQETPGRSVETVSDWEEMEDDLKQELLQ
SSDAQLFRIAKFCNSFPDISLTSNVLDSEDIKAGETISLQVTLKRNLKGRTEVGPVDAPN
YPKIKNEKWWLLVGDMESNQLYAIKMVPLQRYSKVKLDFDAPAQTGRKTYTLYFICDSYM
GCDKEFNFSVDVKDAGPSEDNMIE
NT seq
6195 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggatttaggggtttataggcctaaggggaaggtgagtagggttgcttatgag
acgatgctcgggcttattcagcgggaattaggggggcagccgttgagtgttgtgattggg
gcggcggatgaggttttgggggttttgaaggatgagggtttggggaatgtggggaagagg
gaggggattgagagggtgttggatcgggtgacggataatgtgtttgatcagtttttgggg
attgggagggggattgatgattatggtggttgtggtgatggggacggggaagaaggggat
gattgttttgatgaaggtgtgggtgtggcggttgagtttgcggagagtgaagagaatgat
tttgatatggtatatgaggaggagtacgaggaggaggatttaggggatgagtgtggatta
ggggctatgcggataggtggtggtatcgatgatcaaggagtggaagatgatgaggggatg
gctttgaatgttcaggacattgatgcttattggcttcagaggaagatttctcaagcttat
gacaagcagcagattgatccgcgacagagccagaagcttgcagaagaggtgttgaatatt
ctggctgaaggcggtgatgacagacaagttgagacgaagttattggtgcatcttcagttt
gataagtttagtcttgttaagtatttgttgaagaatcggatgaacatagtgtggtgtatt
cgactggcgagggcagaggaccaagtggaaaggaagaaaattgaagaagaaatgatgcag
ttaggcccagaattggctgttattctggagcagctgcatgtcaccagggcaactgagaaa
gagagacaaaccaacttggagaaaagcatacgacaagaagctcacagactaaaggatgat
ggggaccagggtcgaaggggtacaccagacacagatgcaaatataatgtggtcgaagagt
cagtgtcagttccttgatctggaatgccttgcatttagccaaggtggtctttttatggca
aatagaaagtgtgagcttccgccggggtcatatagaaaccataacaaggattatgaagaa
gtacacgtgccagctttgaagccaaagccacttgctgatggtgagaagcttatcagggtg
tctgacatgccagaatgggctagaccagcttttgaaggaatgtcccagttaaacagggta
caaagcaaagtttacgacacagctcttttttcagctcaaaatcttctactgtgtgctccc
acgggagcgggcaagacaaatgttgcaatgcttactatacttcagcaaattgcattaaat
aggaatgaagatggttcattcaatcacagaaattacaagattgtttatgtggcaccaatg
aaagcacttgtcgctgaagttgttggaaacctgtctaaccgattgaagcattacagcgtt
aaggtgaaagagcttagcggagatcagacactgactcaccagcaaatcaaagaaactcag
gtaattgtaacaacgccagagaagtgggatatcataaccagaaagtcaggagatcggacc
tacacccagcttgtgaaacttttgatcattgatgagatccatctattacatgataaaaga
ggacctgtactggagagcataattgcaaggactgtgagacaggttgagactacaaaagag
catactcggattgttgggttatctgctaccctgcccaattttgaagacgtggctcttttt
cttcgggttgatttaaagaaaggcctctttcatttcgacaatagttatcgaccttgtccc
cttgctcaacagtacattgggatcaccacgaagaaaccattgcagagatttcggttaatg
aatgatgtttgttatgagaaggtgatgagtgtagctggtaagcatcaggtcctaatcttt
gtccactcgaggaaagaaacagaaaaaacggcccgtgctataagagattcagcactaact
aatgatactgttagcagattcttgaaagaggaaagtgctacctgtgaaattcttcatgag
catactgcacttgtaaagagcaatgatctcaaggatcttttgccatatagctttgcaatt
catcatgcaggtttgaatagggctgaccgccaaattgttgaggagctgtttgccgatggt
catatacaagttctggtttctacagcaactcttgcttggggcgtgaatttacctgctcat
actgtgatcatcaaaggtacccagatttacaatcctgaactaggagcatggactgaacta
agtcctctggatgttgtgcagatgcttggtcgggcaggaaggcctcagtacgacacttgt
ggggaaggaataataataactggacatagtgagctacaatattatctttctgtaatgaat
caacaacttcccattgagagtcagttcatgtccaaattggtagatcacttaaacgcggaa
attgtgcttggtactgtgcagaacgccagagaagcctgcaattggctcagttatacatac
atgtacgttcgcatgctacggaatcctactttgtacggtttaagtcctgatgctttgagt
aaagacatattactggaagagagaagagctgatctggttcatactgctgcagcaatatta
gaaaagaacagtctgataatatatgatagaagaaatggatattttcaggtaactgacttg
ggttgcactgcaagtcattattacttatctcacgggacgatatgtgcttacaatgagcat
ttgaagccaacaatgggggacattgagctttatcatttgttttcctctggtgaagaattt
aaatatgtaactgtgaagcaagatgagaaaatggagttggcgaagcttataaaccgcgtt
cccattcccattaaggaaaacctcgaagaacctagtgcaaagattaatgtcttgctacaa
gcttatatttcacgactgaagcttgaaggattatctctgacatcagacatggtttatatc
tctcagaatgctggacgtttggcgcgagctctctttgagatcaccttgaaaagaggatgg
gctcaagtggcagagaaggcgttgaacttgtttaaaatggtcagcaagagaatgtggacc
gtccaatcacctcttcgtcaatttcaaggatttccgagagattttttgatgaaaatggag
aaaaaggatttggcctgggaaagatattatgatctctcttcacctgagctaagtgagatc
tttcggtttggtaggatgggcaaagcattgcaccggtgcgttcaccagtttccaaaactt
gttctggctgctcatgttctgcccatcaatcgtacaattttgagggttgaactcacagtt
acccccgatttccagtgggaagataacgtccatggatatgtagagccattttgggttatt
gtggaagatagttatgcggaactcattcttcatcatgaatatttcttgctgaaaaagcag
tacattgatgaggatcacattctaattttcactgttccaatttatgaaccattgcatcct
cattacctcatccgtgtagtgtcagaaaattggatcggatcacagactgtcttgcctgtt
tacttcaaacatcttattttaccagataaatgccctccacccactgagctacttgacttg
cagcaattacctgtaactgccttaggaaattcgtcttatgaatcactgtaccaagaattt
aagcactttaaccctgtgcagactcaagttttcacagtcctctacaacacagatgacaac
gtcttggttgctgcaccaaccgggagtgggaagaccatatgtgcggaattcgcaatactg
aggtaccatcaaaaaagtcatgacacttttatgcgggcagtttacattgctccaattgaa
tctcttgctaaggaacggtgtaatgattggaatagaaaatttggagaaggtcttggcatg
agagttgtcgaattaaccggtgaaactgctgtagacctcaaactgctggaaaaaggtcaa
ctggtaatcagcactcctgataaatgggatgctctatcacgccgctggaggaagcgtaag
catgttcgagaagttggtcttttcattgttgacgaacttcatctgattgggggtcaaggt
ggtcctatcttagaggtgattgtctctaggatgagatatatagcaagtgaagttgattac
aaaatcagaatagttgctttgtcaacttctctagcaaatgccaaggatctgggtgaatgg
attggtgctacctctcatggtcttttcaactttttacctagtgtccggccagtgcccttg
gatatccatattcagggtgtcgacattactaactttgaagccagaatgcaagcaatgaca
aagccaacatatgcatcaatcgtcaagcatgctaaaagtgggcaacctgccattgtgttc
gttcctacaaggaagcatgctcgtctaactgctgttaattttatgacatactttagtgtg
gaaactggagaaagtcctatgtttattcgacgttccatgaaagaacttgagccttttgtt
gacaaaattcacgaagccatgttgcgtaagacagtgcaatacggtgtgggttatttacac
gagggattaacttccactgatcaagatgtagttagaactctctttgaaacaggttggatc
caagtgtgtgtaataagcagttcaatgtgctggggattgcaattgcgttcccatctggtg
atcataatgggaactcaatatcatgatgggaggggaaatgctcacaacgattatccagtt
acagatattctgcagatgatgggtcaggctagccggccacttatagataattctgcaaag
tgtgttattttttgccatgcaccgcgaaaggagtattacaagaagttcttgcataaagca
tttccagttgaaagcagccttcaccatttcctgcatgatatttttaatgccgaggtggtt
gaacaattaattacaagcaagcaagatgctgtagattacctcacctggacattcatgtac
aggaggcttactcagaatcctagctactataatcttcagggtgttagtcaaaggcatctc
agtgatcacctttcggagcttgtagaaaacacatttagcgatctggaaacaagtgaatgt
gtcgctatagaagatgatttgtatatttctcctcgtagtcttgggatgatagcatcattt
tattatgttagtcctacaacagtggaacgttttaattatcttttaactgtagaaacaaag
ttgaagggtcttttgcagattttggcatcagctgcagaatatgaagaacttccaatacgg
ccaggggacgaacagctgattcagaggttaattaatcatcaaagattctcattttataat
cccaaatgcacagacccacatgtgaaggcatactccctgcttcaagcgcacttttctagg
aaactggtgggtggaaccttggctgccgaccagaaaaaggtgcttctttctgcaagtagg
cttctgcaaacaatgattgacgttgcttcaacccacgggtggcttagcctagcacttctt
ggcatgaaagtgagccaaatggtaacacaaggtatgtgggagcatgactcggagcttcta
cagcttccatactttactaaagaattggctaaaagatgccaagaaactcctggaagaagt
gtagaaacagtgtctgactgggaggagatggaagatgacttgaagcaggagctgttgcaa
agttcagatgctcagttgtttagaattgcaaaattttgcaatagtttcccagatataagt
ttgacctctaatgtactcgatagtgaagacatcaaggctggggaaactatcagtttgcaa
gtaactctaaaacgcaatcttaagggaaggactgaagtgggacctgttgatgctcctaat
taccctaaaataaaaaatgaaaaatggtggcttcttgttggtgatatggaaagtaatcag
ctgtatgccatcaaaatggtgcccttacagagatattcgaaggtgaagcttgattttgat
gctcctgcacaaacaggtagaaaaacctacacactttatttcatatgtgattcatacatg
ggctgtgacaaggagtttaacttcagcgttgatgtcaaggacgcaggaccttcagaggac
aacatgatagaatga
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integrated database retrieval system
