Apium graveolens (celery): 141665629
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Entry
141665629 CDS
T11340
Name
(RefSeq) pre-mRNA-processing protein 40A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141665629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141665629
Spliceosome [BR:
agrv03041
]
Complex A
U1 snRNP components
U1 related factors
141665629
Complex B
141665629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
FF_PRPF40A
WW_TCERG1
SMODS
WW_2
FF_RHG35_4th
DUF7656
Motif
Other DBs
NCBI-GeneID:
141665629
NCBI-ProteinID:
XP_074327717
LinkDB
All DBs
Position
1:complement(107974909..107986148)
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AA seq
996 aa
AA seq
DB search
MANNSQFNGIQPIRPHAAGPQGPPQISLPPMSMQFRPTVPPPQPPPYIPVPSQQFLPVGG
TNIGVPSVAQPVQFPQPIMQQSRPGQGGHIMPLPLPLPIPMPDAQPNRPVTSVSPQPQQN
AQTSNGYMPGLAGPRMPISSTYSISVPSTGQPQINGHTTGQYQPVLQTSVPCYPAGGQPW
LPGSHNIQPAAPVLQSVEQISHSAEVPATTENHSSAENTPSDWIEHVRRGRRFYFNKRTR
VSTWEKPLELMMGTERADASTDWREIMSPDGFKYYYNRVTKKSTWTIPDEVKLAREKMER
ESTYRKQDYDPASVSDLEASSPIVDNTHEVVSSPILVAPAVAVTSVSVCIESATTNATGV
QIPLIVAGPTLDTKSGSSEVPLAMANIDTTAMSNSDEISAGVLTSASGISVGDLEELKNG
TSTESKTSITAVEERTIDQETVVYENKLEGKKAFIALLETANIGSDSTWDQAMRVIINDT
RYAALKTLVERKQAFKEFLEQKKKQEAEERHAKQKKVVEDFRKMLEESQELTASTRWSKA
ITLFEEDERFKAVERAKDRENFYEDYLVELGNKERAKALEEQKRNRMEYIEYLRSCDFIK
ASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYLRDLEKEEEEQIKLRMEEARKAERRNR
DEFRKLMDDHIAAGLLGVKTHWRDYCMKVKELPAYLAVSSNTSGATPKDLFEDVSEELEK
KYLDDKARIKDAVKLGKVNLTSTWTIENLKEAVLETIGSHLVSDANWKLVFDELQERVRE
REEKEAKRRKRVADDFYVFLCSLKEVNASSRWEDCSSAFEDRFKREESFLRDTFENYLSE
LKEKAREKERKRKEEKERKDKETKDREKRKAKERRDKDRGKGKDRDKNEGSDSENADREG
SHSLEENRRSGRDRDRKHRKRHSNSADDLSYDEKDRDRSKSSHRHSSKKSKQTEQHPAEH
DSRHKRHKREHYSGSHWSGDYNEQRERETGEDGEVW
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggctaataattcacaatttaatgggattcagcctattcggcctcatgctgctggcccc
caaggtccaccacaaatttctctcccacccatgtcaatgcaattccgacctacagttcca
ccaccgcagccacctccatatattcctgtgccttcccagcagtttcttcctgtaggggga
acaaacattggagtgccttctgtggcacagccagtccagtttccgcaacctattatgcag
cagtcaagacctggccaaggagggcatatcatgccgctgccacttcctcttccaattcca
atgcctgatgctcaaccaaataggcctgttacatctgtttcaccacagcctcagcagaat
gctcagacttctaacggttacatgcctggtttagcaggtccaagaatgcctatatcatct
acatactctatatctgttccatccacgggccagccacaaataaatgggcacaccacgggc
cagtaccagccagtactccagacaagtgtgccatgttatcctgcagggggacaaccgtgg
ttgccgggtagccacaacatacaacctgcagcgcctgtgcttcagtctgtggaacaaatc
tcacattctgcagaagttcccgcaactacggaaaatcacagttctgctgaaaatacacca
tcagattggattgagcatgttcgtagaggaagaagattttatttcaacaaaaggacaagg
gtgtctacttgggaaaaaccactggaattgatgatgggaactgagagggcagatgcatca
accgactggagggagattatgagtcctgatggattcaagtattattacaacagagtcact
aaaaaatcaacttggactattcctgatgaagtcaagctggctcgtgaaaagatggaaagg
gaatctacatacagaaaacaagattacgatcctgcttccgtctctgatttagaagcgtct
tcccctattgtagataacactcatgaggtagtgtcaagcccaattcttgtggcacctgct
gttgcagttacctcagtatccgtatgcatagaatctgctacaacaaatgcaactggagtt
cagatacctttaattgtggctggacctacacttgatactaaatcaggaagctctgaagtt
cctctcgccatggctaatattgatacaaccgcaatgagcaactcagatgaaatatctgct
ggggtgttaactagtgcaagtggaatttctgtaggggatctagaggaattgaagaatggg
actagcactgagagtaagactagtattactgcagtggaggagagaacgattgatcaggag
acagtagtatatgaaaataaattggaggggaaaaaagcatttatagcactactagaaact
gcaaatatagggtcagactcgacatgggaccaggccatgagggtcattattaatgacact
agatatgctgctttaaaaacacttgtggagcgaaagcaagcttttaaagagttcctggag
caaaagaagaagcaagaagcagaagagaggcatgctaaacagaaaaaagtagtagaagat
ttcagaaagatgttggaagagtcccaagagctgacagcatccactagatggagcaaagcg
ataactctatttgaggaagatgagcgttttaaagctgttgaacgagccaaagaccgtgag
aatttttatgaggattatcttgtggaactgggtaataaggaacgagcaaaagcattggag
gaacagaagcgtaacagaatggaatacattgaatacttaagatcctgtgactttataaag
gcaagcagccagtggaggaaagtgcaggaccgtctggaggctgatgagaggtgctcgcgt
cttgaaaaaattgatcgtttagaaatctttcaggaatatttacgtgatttagagaaggag
gaggaagagcagataaaattgcggatggaagaagcaagaaaagctgaacgtagaaaccgt
gatgagtttcgcaagttgatggatgatcatatcgctgcaggattgcttggtgtaaaaact
cactggcgagactattgtatgaaggttaaagaattgcctgcatatttggctgtttcatca
aacacctctggtgcaacaccaaaagatttgtttgaagatgtctctgaggagttggaaaaa
aagtatcttgatgacaaggctcgcataaaggatgcagtaaagttagggaaggtaaacctc
acatcgacatggacaattgagaatttgaaggaagcggttttagaaactattggctcacat
ctggtgtcagatgctaactggaagctcgtgtttgatgaattacaagaaagagtaagggag
agagaggaaaaagaagctaaaaggcgcaaacgtgttgctgatgatttttatgtttttttg
tgtagcttaaaggaagttaacgcatcttcaagatgggaagattgcagttcagcatttgaa
gataggttcaagagggaggaaagctttttacgggacacctttgagaattacttatcagaa
cttaaagaaaaggctagagagaaagagcggaaaagaaaagaggaaaaggaaagaaaggat
aaagaaacaaaagacagagagaaaagaaaggctaaagagagaagggacaaggatagagga
aaaggaaaagacagagataagaatgaggggtcagacagtgaaaatgctgatcgagaaggt
tcccacagtttagaagaaaatagaaggtcaggaagagacagagacagaaaacatagaaag
cggcattcaaattctgcagatgatttgagttatgatgaaaaagatagagatcggtcgaaa
agttctcatagacatagcagcaaaaagtcgaagcagactgagcagcatccagcagaacat
gatagccggcataagagacacaagagagaacattacagtggttctcattggagcggtgat
tacaatgaacaaagagaaagggaaactggagaggatggcgaagtttggtaa
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