Apium graveolens (celery): 141668388
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Entry
141668388 CDS
T11340
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03013
Nucleocytoplasmic transport
agrv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141668388
03015 mRNA surveillance pathway
141668388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141668388
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
141668388
5.6.2.5 RNA 5'-3' helicase
141668388
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
141668388
mRNA cycle factors
Common to processing body (P body) and stress granule
141668388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
UvrD-helicase
AAA_22
Ribosomal_S13_N
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
141668388
NCBI-ProteinID:
XP_074331366
LinkDB
All DBs
Position
6:complement(28089770..28115200)
Genome browser
AA seq
1259 aa
AA seq
DB search
MDSQSNNLYDTASQPDTGNDAYTFLEFNTTADDDFDYPDFHHLSQPIRASAWPTLSDSLA
AEPNLSDHHSDASPGSGKSRGGGGSSNQAAVDAIAAGMSGLTFEETGDDDGYEFGKGDFT
EHACRYCGVQNPACVVRCNVPSCRKWFCNSRGSTSGSHIVNHLVRAKHKEVCLHKDSPLG
ETILECYNCGCRNVFLLGFISAKAESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRC
FLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDATLEDLEKPGVDDEPQHVALKYE
DAYQYQNVFAPLIKLEADYDKMMKESQSKDSLTIRWDIGLNKKRVAYFVFPKEDNELRLV
PGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKST
SFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFA
VKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG
LKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYK
ALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQSTEPECLIPLVLGVKQ
VVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSF
YEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKI
VTTFLKSGVIPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDY
IILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHE
CLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGGGPGMGPNDSFGSASSTADADRRSGRSR
GVAGSFMPPGQPNGTHKPGLHPAGYPMPRVPITPYHGCPPQPYAIPARGAVHGPVGAVPH
LPQQGSRGFGAGRGNTGAPIGNHLPHQQGSQQAVGSVGSNFNYSTLEGPSSQPSPGGPLS
QPGYVSNMAVQANQSFRDGFSIGGMSQDILGDDFKSQGSHVPYNVADFSTQASQSGYNVD
YATQGAQGGFPSSFLNQNSQAGYSRFGSGNEFMSQDYLAHGSQGLFTQAGFNDPSQEDAS
QSHFGLGNASQIQSQALLNPLYSQPFTNYNTQPHNMQAPQQQQAQQGQGSQNQKLHYSS
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggactctcaatcaaacaatctctacgacaccgcatctcaacccgacaccggcaacgac
gcctacactttcctcgaatttaacaccaccgccgacgatgactttgattaccccgatttt
caccacctctctcaaccaattcgcgcctccgcatggcccacactttccgattctctcgct
gccgaacctaatttatccgatcaccactccgatgcttctcctggttccggaaagagtaga
ggagggggtgggagtagtaatcaggctgctgtcgatgcgatagccgctggaatgagtgga
ttgactttcgaagagactggcgatgatgatggttatgagtttggtaaaggtgattttacg
gagcacgcttgtcggtattgtggtgtgcagaatcctgcttgtgttgttagatgtaatgtg
ccttcgtgtcggaaatggttttgtaattctagagggagtacgtccgggtcgcatatcgtt
aatcatctggtgcgggcgaaacataaagaagtttgtcttcataaagacagtcccttggga
gaaactattttagagtgttacaattgtggatgtcgaaacgtgtttcttcttgggttcatt
tctgccaaggcagagagtgttgttgttcttctttgcagggagccgtgtctcaatgttaat
gcattgaaagacatgaactgggacctgagtcaatggtgtccccttattgatgaccgatgt
ttcctgcagtggcttgtcaaggtcccctctgaacaggagcagttgagagcacggcagatc
agcgctcaacagattaataaggtagaagaactttggaagtcaaatcctgatgctactctt
gaagatcttgagaagcctggtgtggatgatgaaccccaacatgttgctttgaagtatgag
gacgcatatcagtatcaaaatgtgtttgcgccacttatcaagctcgaagctgattatgat
aaaatgatgaaagagtctcaaagcaaagacagtcttactattcggtgggatattggttta
aacaagaaacgtgtagcgtacttcgtgtttccgaaggaagataatgaattacgccttgtt
cccggggatgagttacgactgcgttattcaggtgatgcagctcatccagcttggcagtca
gtgggtcacgtggtaaagttgacagcacaagaggaggtggctcttgaactccgtgccagt
cagggagttcctgttgatgtaaaccatgggtttagtgttgattttgtttggaagagcaca
agttttgataggatgcagggtgcaatgaaaactttcgctgtagatgaaacaagtgttagc
gggtacatttatcatcacttgttgggccatgaagttgaggttcaaatggttcgtaatgcc
ctgcctcgtcgttttggcgcaccaggacttcctgagcttaatgcttctcaagtctttgct
gtaaagagtgtacttcagaagccaataagtttgattcaaggtccacctggcacagggaaa
actgtcacttctgcagctattgtatatcatatggctaaacaagggcaggggcaggtttta
gtttgtgctcccagtaatgtagctgtggaccaactggcagagaagataagtgccaccggc
ttaaaggttgttaggctctgtgcaaaatcacgggaagctgtaagttctccagttgaacat
ctaaccctgcattatcaggtcagacatcttgatacttctgaaaagagtgaacttcacaag
ttacagcaattgaaagacgaacaaggagagctgtccagcagtgatgagaaaaagtataag
gctctgaagcgagcaacggagagagaaatttctcaaagtgctgatgtaatatgctgtacc
tgtgttggtgctggagatcctcgattggcaaattttcgattccggcaggtcctcattgat
gaatcaactcaatcaactgagccagagtgtctgattccattggttctcggagttaagcag
gtggttcttgttggtgatcattgccaacttggtcctgtcattatgtgcaagaaagcagct
cgtgctggactagcacaatctttgtttgagcgtctggtgctgctaggtgtaaaaccaatt
agattacaggtgcaataccggatgcatccatccctttctgaattcccctctaatagcttc
tatgaaggtacactccagaatggagttacaataaatgaaaggcagtcgacaggcattgat
tttccttggcctgtgccaaatcgaccaatgttcttttacgtgcagatgggacaagaggag
ataagcgctagcgggacatcctatctaaacaggacagaagctgcaaatgtggaaaaaatt
gtgactacttttctgaagagtggtgtgattcccagtcagataggggtgataacaccatac
gaaggccagcgtgcatacatcgtcaactacatgtcaagaaatggtgctttaagacagcaa
ctctacaaagaaattgaggtggctagtgtagattctttccaagggagggagaaggattat
attatattgtcgtgtgtgagaagtaatgaacatcagggtattggattccttaatgatcca
cgaaggctaaatgtcgctctcactcgtgcccgttatggcattgtcatcctgggtaatcca
aaagtccttagcaaacaaccactgtggaatggcttgctgacccattataaggaacatgag
tgtttggtggaaggacctttgaataatttgaagcagagcatggtgcagtttcaaaagcct
aaaaagatttacaatgatcggagacttttctatggtggtggacctggaatggggcctaat
gatagttttgggtctgcatcttcaactgcagatgctgataggagaagtggtcgttctagg
ggcgttgcaggatctttcatgcctcctggccaacccaatggtacacataaacctggtctg
catccagctggttatcccatgcctcgtgttccgattaccccttatcatgggtgccctcca
cagccatatgccattcctgctcgcggtgctgtacatggacctgttggagctgttcctcat
cttccccagcagggaagtcgaggttttggtgctggacgtggcaatactggtgcccccata
ggaaatcatctcccgcaccagcaaggttctcagcaagcagttgggagtgttgggtctaat
tttaattattctactctggagggtccaagtagccagccatctcctggtggtccattgtcg
caacctggttatgtttctaatatggctgttcaagcaaatcaatcttttcgggatgggttc
tctattggcggcatgtctcaggatattttgggagatgattttaaaagccagggttcacat
gttccatataatgttgctgatttctccactcaggcttctcaaagtggatataatgttgat
tatgcaacgcagggagcacaaggagggttcccgagtagctttctgaatcagaattctcaa
gcaggatattctcgcttcggttcaggcaatgagttcatgtctcaggactacttggcccat
ggttcacaaggcctctttacgcaggctggattcaatgatccttcacaagaagatgcttca
cagagccactttggcttgggcaatgctagtcaaatccagtctcaggcactgctgaatcct
ctttattcccagcctttcaccaactacaatactcagccgcataatatgcaagctccacaa
cagcaacaagcccaacagggacaagggtcccagaatcagaaactccattatagtagttga
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integrated database retrieval system
