Apium graveolens (celery): 141670174
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Entry
141670174 CDS
T11340
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141670174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141670174
Enzymes [BR:
agrv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
141670174
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141670174
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
141670174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
L_lactis_ph-MCP
Motif
Other DBs
NCBI-GeneID:
141670174
NCBI-ProteinID:
XP_074332246
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All DBs
Position
1:complement(167035521..167047426)
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AA seq
387 aa
AA seq
DB search
MLLHHLRLPSLPYRAISCFRSKMSTSSEPITRKFIPVQHSLLDSQSETHGSKLRLVSYNI
LAQAYVKSSLFPHSPGPCLKWKARCQALLTVLRSFEADILCLQEVDEYDTFYKGNTESCG
YSSVYIQRSGTKRDGCGIFYKNNKLELVMEEKIEYNDLVNSIQEEEALCTNMDKITIDKS
NQDTASKEGLQPEDTKDRGDPNDPHVRLKRDCVGIMTAFRLKECSEHLIIVANTHIFWDP
EWADVKLAQVKYLLSRLSKFKTLVSDKFDSKSLVLLSGDFNSVPGDEVYQYLTSGSSSVE
PRPEEMENLPISLNSVYASLRGEPQFTNCTPGFTGTLDYIFFSPSESIKPISYLDLPEAD
SSDVIGGLPNYNHPSDHLPIGADFVIV
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgctgctccatcatctccgacttccttcacttccttaccgtgctatttcttgcttccgc
agcaaaatgagcaccagttcagagccaattactcgcaaattcatcccagtccaacactct
ctacttgattctcaatcggaaactcatggctccaaattacgactcgtctcgtataacatt
ttagctcaggcttatgtgaagagttccttgtttccgcactcaccaggaccctgtctcaag
tggaaagctcgttgccaggcactcttaacagttcttaggagctttgaggctgatatcctt
tgcttgcaggaggtagatgagtatgatactttttacaaagggaacaccgagagttgtggc
tattcgagtgtctacattcagagaagtggcacgaagcgcgatggctgtggaattttttac
aaaaacaacaaactggagttggtcatggaggagaaaatagagtataatgatctggtgaac
tcgattcaagaagaagaggcattgtgtactaatatggataaaattaccattgataagagc
aaccaagatactgcatcgaaggaaggtttgcagcccgaagacacaaaagatcgtggagat
cctaacgatccacatgtaagattaaagcgtgattgtgtaggtattatgacagcatttaga
ctgaaggaatgttcggagcatcttataattgttgcaaacacacatattttctgggatcca
gaatgggctgatgtaaagcttgcacaagttaaatatctcctgtcgcgcctttctaaattt
aaaactctggtgtcagacaaatttgacagcaaatctttggttctcctttctggtgacttc
aattcagtacctggagatgaggtatatcagtacctcacttctggtagttcttctgtggaa
cctcgaccggaagagatggagaatcttcctatttcattaaatagtgtatatgcatctctg
aggggagaaccacaattcacaaactgcacccctggttttaccggtactctggattatata
ttcttctctcccagtgaaagtatcaaacctatcagctacctagatcttcctgaagctgac
tcctctgacgtaataggtggactcccaaattacaaccatcctagtgatcatctgcctatt
ggcgctgacttcgtgattgtttga
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