Apium graveolens (celery): 141672544
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Entry
141672544 CDS
T11340
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
agrv Apium graveolens (celery)
Pathway
agrv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141672544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agrv03021
]
141672544
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141672544
Transcription machinery [BR:
agrv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141672544
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
141672544
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
141672544
NCBI-ProteinID:
XP_074335264
LinkDB
All DBs
Position
7:complement(77341974..77350822)
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AA seq
686 aa
AA seq
DB search
MDDGEGGLSFDFEGGLDTGPTQPTASVPIMHQPPSLPATTNTPHFAPPADVAGHPAPSNF
SGRRSYRQTVCRHWLRSLCMKGEACGFLHQYDKARMPICRFFKLFGECREQDCVYKHTNE
DIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVFQKIQQLTSHSYNNSNRFYQNRNP
NYTQHAERPQVPVGANDVNQVMKSTPTESHNVQKQQQKTQQPVIQPQVQNLSNGQQNHAS
GSAIPLPQGISRYFVVKSCNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSIN
RTRHFQGCAKMTSKIGGSAVGGNWKYAHGTAHYGRNFSVKWLKLCELSFHNTRHLRNPYN
ENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMEISLAAESKREEEKAKGVNPEDGTE
NQDIVPFEDNEEEEEEESDEEDQSFSRGFTMAGQGRGRGRGMMWPPNMPLARGGRPMPGM
RGFPPVMMGPDGFSYGPDGFPMPDMFNMGPRGFGPFGPRFSGDFAGPGGMMYQGRPYPGN
FPGGGFGMMMGPGRAPFMGGGPIARAARPGDMHPMYSQSQPQPSQTSNRGKRDQKATSND
RSDRYSTGSDQGKGVDVEGSDGQDDVSQHQQKLNPHQEDHIGAGNSLKNNESGSEDEAPR
RSRHGEGRKKRLSSERDASAASENQE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgaaggcggcctgagcttcgatttcgaaggcggcctcgataccgggccc
acacaacccaccgcatccgtcccaatcatgcaccaacctccctcccttcccgccacgaca
aacacgccgcatttcgccccaccggcggatgttgccggtcatccggcgccgtcgaacttc
tccgggcggcggagctaccggcaaacagtgtgtaggcactggcttcggagtttgtgtatg
aaaggagaagcttgtgggtttctgcaccagtatgataaggctcggatgccaatttgtcgg
ttttttaaacttttcggagagtgtcgagagcaggattgtgtttataagcatactaatgag
gatattaaagagtgtaatatgtataagctgggattctgtccaaatggtcctgattgtcgg
tataggcatgcaaagctgccaggacctccgcctccagtggaagaagtatttcaaaaaatt
cagcaactgacgtcacacagttacaataactcgaacagattttatcaaaaccgtaaccct
aattatactcaacatgcagaaaggcctcaggttccagtgggggctaatgatgtcaatcaa
gtaatgaaatctacaccaacagaatcacacaatgtgcagaagcagcaacaaaagacccag
caaccagtcatccagccacaagttcagaatctttctaatggccagcaaaatcatgctagc
ggatctgctattcccctgcctcaaggaatatctaggtattttgttgtcaaaagttgcaat
cgagagaattttgaattgtctgttcaacaaggagtttgggctactcaaaggagcaatgaa
gctaaacttaatgaagcttttgattcggtggaaaatgttattttaatattttcaataaac
aggactcgacattttcagggctgtgcgaagatgacatctaaaattggtgggtctgctgta
ggcggaaattggaagtatgcccacggaactgcccattatggaaggaatttctcagtcaaa
tggttaaagctttgcgaattatccttccacaatacacgccatttgaggaatccatacaat
gagaacttaccagtcaagattagcagagactgccaagagctggagccctcaattggtgag
cagttggcttccctgctttatcttgagccagacagtgaactgatggaaatttcacttgca
gcagaatcaaaaagggaggaggagaaggccaaaggggtcaatcccgaggatgggactgaa
aatcaagatattgttccgtttgaggacaacgaagaggaggaggaggaagagagcgatgaa
gaggatcagagctttagccgtggatttacaatggcaggtcaaggcagaggtagggggagg
ggcatgatgtggcctccgaacatgcctctagcacgaggtggcagaccaatgcccggaatg
cgtggctttccaccggtcatgatggggcctgatggattttcttatgggcctgatggtttt
cccatgccagatatgtttaatatgggaccccgtggttttggtccatttggccctagattc
tctggtgattttgctggccctggagggatgatgtatcaaggccgtccttatcccggaaac
tttccgggcggtggatttggaatgatgatgggtcccggaagagctccttttatgggaggt
ggacccatagcaagagctgctcgtcccggagacatgcatcccatgtattctcagtctcaa
ccgcaaccctctcagacctcaaacagaggtaagagggaccaaaaggcaacatcaaatgat
aggagtgatagatatagtacaggttctgatcaaggcaagggtgtagatgtggaaggctca
gatgggcaggatgatgtttcacagcatcagcaaaaattgaatccccaccaagaagatcat
ataggtgctggaaatagcttaaaaaataatgaaagtggtagtgaagatgaggcgccgagg
aggtcgagacatggggaaggaagaaagaagaggctcagctctgagcgagatgccagtgca
gcttctgaaaaccaggagtag
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