Apium graveolens (celery): 141675130
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Entry
141675130 CDS
T11340
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC141675130
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141675130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141675130
03041 Spliceosome [BR:
agrv03041
]
141675130
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141675130
Spliceosome [BR:
agrv03041
]
Complex B
Other components
Prp19-related factors
141675130
Complex C
141675130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
UTP6_C
TPR_19
AbiH
Motif
Other DBs
NCBI-GeneID:
141675130
NCBI-ProteinID:
XP_074337948
LinkDB
All DBs
Position
7:211310318..211321470
Genome browser
AA seq
907 aa
AA seq
DB search
MSIPTEYYPSQDDLVYEEELLRNPFSLKLWWRYLIARTDSPFEKRRLIYERSLKALPGSY
KLWYAYLRERLELVRNFPINHFEYKSLNNTFERAFVTMHKMPRIWIMYLLTLTHQKLVTV
TRRCFDRALCALPVKQHDRVWEIYLVFVSQRGVPIETSLRVYRRYLKYDPEHIEEFIEFL
VDSELWQEAAERLAGVLNDDTFYSIKGKTKHKLWLELCDLLTQHAGEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLLMKSRDIFEEGMTMVMTVRDFSVIFDAYSQFEESML
ALKMEDMSESEEEDEEGSVVEEEEDEGDRLNVGDIKLKLKKLWLSDDKDVNLGLARLEYF
MDRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPARQLETYTQAVRTIDPMKAVGKPHTL
WVALAKLFETHNGINDARVIFDEAVQVGYKAVDNLASVWCEWAEMELRHKNFKLALEVMR
RATAEPSVEVKRRVAAEGNEPVQIKLPKSPRLWTFYVDLEESLGSLESTRAVYERILDLR
IATPQIIINYAMLLEDNKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKLE
RARELFEHAVEMAPAEAVKPLYLQYAKLEEDHGLAKRAMSVYDQATKAVPASEKLSMYQI
YIARVAEIFGVPKTREIYEQAIESGLPDNDAKTMCIKYAELEKSLGEIDRSRGIYKHASE
FTDPRSDADFWSKWHEFEVQHGNEDTFREMLHIKRSVTAKYSQSHIILPEYMMQKDLKSN
SDEATDPQKRNGIRGDDMAALERQLVPPTNDAIVKDNTRLLGFVSAGVESQTDGGLKVAA
NKEDIELPDESDSEDEGNVEITQKDIPETVYGGIRKRTEEDEDADKGKDGDDNLGALERI
KRMKRGG
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcccgacagagtactacccaagtcaagatgacttagtctacgaagaagagctt
ctccgcaatccattcagcttaaagctctggtggcgctacttaattgctcgcactgactcg
ccgttcgagaaacgccgattgatttacgagcgttcactcaaagctctccccggaagctac
aaattatggtacgcttatttacgcgaacgtctcgaattggttcgaaactttcccattaat
catttcgaatataaatctcttaataatactttcgaaagagcttttgttactatgcataaa
atgcctagaatttggattatgtacttgttgactttgactcatcagaagttagttacggtc
actagacgctgtttcgatagggcgttgtgtgcgttgcctgttaagcaacacgatagggtt
tgggagatttatttagtgtttgtgagtcagcgaggagtgccaattgagacgtcgcttagg
gtttataggaggtatttgaagtatgatcccgagcatattgaggagtttattgagtttttg
gtggattcggagttgtggcaagaggctgccgagaggttagcgggggttttgaatgacgat
accttttattcgattaaagggaagacgaagcataagttgtggttggagttgtgtgatttg
ttgacgcagcatgcgggggagatttcggggttgaatgttgatgcgattattaggggtggg
attaggaagtttacggatgaggttgggaggttgtggacgtcgttggcggattattatatt
aggaggaaattgttgatgaagtcgagggatatttttgaagaggggatgaccatggttatg
actgtcagggattttagtgtgatttttgatgcgtattcgcagtttgaggagagtatgctt
gctttgaagatggaagatatgagtgagagtgaggaagaggatgaggaagggtcggtggtt
gaagaggaggaggatgaaggggatcggttaaatgtgggagatattaaattgaagctgaaa
aagctatggttgtcggatgataaagacgtgaatttgggattagctcgtttagaatatttt
atggataggaggccggaattagctaatagtgtgctgcttcggcaaaacccgcataatgtg
gaacagtggcatagaagagttaagatatttgaagggaatcctgctagacaacttgagacc
tatacgcaagctgtacggactattgatccaatgaaagctgtgggaaagcctcatactttg
tgggtggcattagctaaattgtttgaaactcacaatggtattaacgatgctagggtaata
tttgatgaagctgtacaagttggctacaaagctgtggataatttggctagtgtatggtgt
gaatgggcagagatggaattaagacacaagaattttaagttagctctggaggtaatgagg
cgggctacagctgagccatccgttgaggtcaaacgtagagtggctgctgagggcaatgaa
ccagttcaaataaagctgcctaagtctcccaggctttggaccttctacgttgacttggag
gagagcttaggctccttagagtcaactcgtgcagtgtatgagaggatactagacctaagg
atcgccacaccccaaataataatcaattacgctatgctcttggaagacaataagtacttt
gaggatgcttttaaggtttatgaacgaggcgtgaagatatttaaatatccacatgtaaag
gatatatgggtgacgtatctctctaaatttgttaaaagatacggaaagtcaaagctcgaa
cgagccagagagctatttgagcatgctgttgaaatggcccccgctgaagcagtgaagcct
ttgtatttgcaatatgccaaattggaagaggatcacggtctagccaagcgagcaatgagc
gtttatgatcaagcaacaaaggccgtccctgctagtgaaaaattgagcatgtaccaaata
tacatagcacgtgtagctgaaatatttggggtaccaaaaacaagggaaatatatgagcaa
gcaatagaatccgggcttccagacaatgatgcaaaaacaatgtgtataaaatatgcagaa
cttgagaagagtctgggagagatagatcgctctcgtggaatatacaagcatgcatctgag
ttcaccgatccaagatctgatgctgacttttggagcaagtggcacgaatttgaggtgcaa
catggtaatgaagatactttcagggagatgctacatattaaaaggagtgttactgcaaag
tatagtcagtcgcacattattcttccagagtatatgatgcaaaaggatctaaagtccaat
tcagatgaagcaacagaccctcagaagaggaatggaattcgtggagatgatatggctgct
cttgagaggcagctagtacctcctacaaatgatgctattgttaaggataacacacggttg
ctgggctttgtgagtgcaggagttgagtcgcagacagatggaggtcttaaggttgctgct
aataaagaagacatagagctgccagatgaaagtgatagtgaagatgaaggtaatgttgag
atcacccagaaagatattccagaaactgtttatggaggcatacggaaaagaactgaagaa
gatgaagacgctgacaagggtaaggacggtgatgataaccttggcgcgcttgagcgtata
aaaagaatgaaacgaggtgggtaa
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