KEGG   Apium graveolens (celery): 141676924
Entry
141676924         CDS       T11340                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    141676924
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:agrv03021]
    141676924
Enzymes [BR:agrv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     141676924
Transcription machinery [BR:agrv03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     141676924
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 141676924
NCBI-ProteinID: XP_074338741
LinkDB
Position
8:complement(23481604..23489777)
AA seq 1180 aa
MGKSDYMDVDIDIDDLFEDDLGDLGEPFLNNVCKKAATSFFEQHGLISHQLNSYNDFIKH
GIQNVFDSIGEITVQPGYDPSKKGDGDWRYASVKFGKVKLDPPTFFTGEKFSTDNAIDFV
DFYPRHARLQNMTYSSKMKVEVQLQVYTQKMVRSDKFKTGKEQHVDKAVCKEIREEIPIG
TLPVMVNSDLCWMKKAKQGDCYFDHGGYFIIKGAEKTFVAQEQICLKRLWLASNPYWTAS
YRHAFKRKRVLVKLSDPKSDDIGGGEKILTVYFLGIEIPIWILFFALGASSDKEVVNLID
VDVKDGRIVNIIIASVHHADKECDEECGQKFRRRAMALKYVEKKLKSCQFPPAESVEDCI
NKYLFSSLAGFKQKARVLAYMVKCLLQAYTGRRKVDNRDDFRNKRLELAGELLERELKVH
LKHAEKYMVRVMQKDLYNDKVEFIERYLDSSIITNGLSRAFSTGTWSHPYIRGERTSGVV
ANLGRTNPLQMIAEMRRTRQHVNFTGRVGDARYPHPSHWGKLCFLSTPDGENCGLIKNLA
STGLVSTTVYESILETLLACGMEELVDDTSSSLRGKDNIFLDGELVGMCEDSTSFVTELR
NMRRSKELPHQVEIKRDEKNREVRIFCDAGRILRPLLVVNNLKKIKIMKGGDYSFQSLLD
AGVIELIGTEEEEDCCTAWGIKYLMMKNSGDAPKRYTHCELDMSFLLGLSAGLTPFCNHD
HARRALYQSQKHSHQAIGFSTTNPSIRVDTNTNQLYYPQRPLFRTMLSECLGKTDNSKML
PKPEFYNGQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKSDVNNKEALPKK
QKMEDAINFGKIPSKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGIDQSVKLKHTEK
GMVQKVILSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGI
VPDIVINPHAFPSRQTPGQLLEAALGKGIALGGKERYATPFSTVSVDAITDQLHRAGFCR
WGNERVYNGRTGEMIRSLVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFG
GIKFGEMERDCLIAHGASANLHERLFTLSDCSQMHICRKCKHPVNVIQRTVDGRKIRGPY
CRFCESWEDIVKASVPYGAKLLCQELFSMGISLKFETRLC
NT seq 3543 nt   +upstreamnt  +downstreamnt
atgggcaagtcagattacatggacgtagacatagacatagacgatctctttgaggacgac
ttaggagatctaggagaaccctttttaaataatgtttgtaaaaaggcagcaacgtccttt
tttgaacaacatggactgattagtcaccagctcaattcatataatgattttattaaacac
ggtatccagaatgtgtttgattctattggtgagataacagtccagcctgggtatgatcca
tctaaaaagggtgatggcgattggaggtatgcgtcagtgaagttcggaaaggtcaagctt
gacccaccaacatttttcacgggcgagaagttctctactgataatgctatagattttgtg
gacttctatcccagacatgctcggcttcaaaatatgacgtattcttcgaagatgaaagtt
gaggttcagctacaggtatatacccagaagatggttaggagtgacaagtttaaaactggg
aaagaacagcatgttgacaaagctgtctgtaaggagattcgggaggagattcctattgga
acgcttccagtgatggtaaactctgatttatgctggatgaaaaaagctaagcaaggtgat
tgttattttgatcatggaggctatttcataatcaaaggagctgagaagacctttgtcgct
caagaacagatctgcttgaagaggctgtggttggctagcaatccttattggacggcttca
tatcgtcatgctttcaaaagaaaaagagtccttgtaaaactgtcagaccctaaaagtgat
gacatcggaggtggcgaaaaaattcttacagtatactttttggggatagagattccaata
tggatattattttttgctcttggtgcatcctctgataaagaagttgttaacttgattgat
gttgatgttaaagatggcagaattgtaaatataattattgcttcagttcatcacgctgac
aaagagtgtgatgaggagtgtggacagaagttccgtagaagagcaatggctcttaaatat
gtagaaaagaaacttaaaagttgccagtttccccctgcagaatctgttgaagattgcatt
aataagtatctattttccagtcttgctggattcaagcagaaggctcgcgttcttgcttat
atggtgaaatgcctcttgcaggcttacactggtcgtagaaaagttgataacagggatgat
ttcagaaacaagaggttagagttggctggcgagttacttgagcgcgagcttaaagttcat
cttaaacatgctgaaaaatacatggtcagggttatgcagaaagatctttacaatgataaa
gttgagtttattgaacgctatctggattcgtcaatcattacaaatggtctttcaagggca
ttctccacaggtacttggtctcatccatacatcagaggggaaaggacctcaggtgtagtg
gccaatcttggtcgaactaatccattgcaaatgattgctgaaatgaggagaacacgtcag
catgttaatttcacagggagagttggtgatgcaagatacccgcacccttctcactggggg
aagttatgttttctctctactcctgatggagaaaattgtggcctcataaaaaatctggct
agcactgggcttgtcagtacaactgtatatgagtcgatacttgaaacactactcgcatgt
ggaatggaggaattggtagatgatacttcgtcttctcttcgtggtaaggacaatatattc
ctggatggagaattggttggaatgtgtgaagattccacatcatttgtcacagagttacga
aatatgagacgctcaaaggaacttccccaccaggtggagattaaaagagatgagaaaaat
agagaagtgcgcattttttgtgatgctggaaggattttacgccctctcttagttgtcaac
aatttgaaaaaaattaaaataatgaaggggggagattactcttttcagtctcttttggat
gctggagtaattgagctgattgggactgaagaggaggaagactgttgcacagcatggggg
atcaaatatctcatgatgaaaaacagcggagatgcacccaagagatacacacactgtgaa
cttgacatgtcattcctcttgggtttaagtgccggactgacacccttttgtaatcatgac
catgcaaggagagccctctaccaatcacagaagcattcgcatcaggccattggtttttct
actaccaacccaagtatcagagttgacacaaatacaaatcagttatattatcctcaaaga
ccacttttccggacaatgctttccgaatgtcttggaaagacggataacagcaagatgctt
cctaagcctgaattttataatgggcagtgcgctatagtagcggtaaatgttcaccttggt
tacaaccaagaagattccttggttatgaatcgctcttcactggagcggggtatgtttcga
tcagagcacatcagaagttacaagtctgatgtcaacaataaagaagcccttcctaagaag
cagaaaatggaggatgcaataaactttggaaagattccaagtaaaattggtcgggttgac
agcttagatgaggacggttttccgtttattggtgccaacctgcagactggtgatattgtt
attggaaaacatgcagaatcagggattgatcaaagtgtcaaactaaaacatacagaaaag
ggcatggttcagaaagttatactttcttcaaatgatgaaggaaaaaactttgctgtggta
tctttaagacaggtccggtccccatgtcttggagataagttttctagcatgcacgggcaa
aagggtgttctaggttttctggaatctcaggagaacttccctttcactaggcaaggcata
gttccggatattgtcataaacccacatgcatttccttcgcgccaaactccgggccagctt
ctggaggctgctttgggaaaagggattgcccttgggggtaaagaaagatatgccacccct
ttctccactgtatctgttgatgccataacagatcaacttcatagggccggtttttgtaga
tggggaaacgaaagagtgtacaatgggcgcactggtgaaatgattcgttccctggtgttt
atgggcccaacctgctaccagcgcttgatccatatggctgaagacaaggtaaagtttagg
aacacagggcctgttcatcctctcaccagacaaccagttgctgacagaaagcgttttgga
ggaatcaagtttggggagatggagcgtgattgcctcattgcccacggagcctcagctaat
ttgcacgaacgacttttcacactcagtgactgctcgcagatgcatatatgtcgcaagtgc
aaacacccagtaaatgtgatccagaggacagtggatgggcgcaagattcgtggcccgtat
tgccgcttttgcgagtcctgggaagacattgttaaagcaagtgtgccttatggagcgaag
ctactttgccaggagcttttcagcatgggcatatctctgaagtttgaaactcggttgtgt
tga

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