Apium graveolens (celery): 141677094
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Entry
141677094 CDS
T11340
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141677094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141677094
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141677094
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Paralog
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Bee_toxin
Motif
Other DBs
NCBI-GeneID:
141677094
NCBI-ProteinID:
XP_074338929
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Position
8:complement(146486907..146491802)
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AA seq
426 aa
AA seq
DB search
MEIPIKPIDQLLEKVLCMNILSSDYFKELYRVKTFYEVIDEIYYQVDHVEPWMTGNCRGP
STAFCLLYKFFTMKLTAKQMSVLLDHEDSPYIRAIGFLYLRYAADPKTLWGWFEPYIKDE
EEFSPGSNERKTTMGVYIRDLLLGQYYFDTLFPRIPVPVMRLIQANLEKLKLPTKHAGVT
GETTRGSDDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRNMPPPSNGRKYDDDARR
SPSRPRSKSRDLGDNEYGDRDRDRGRDRDRDRDGSRGRDRERVRDRERDSDGYRDRNGES
DRSRDRERRLDYDRRSRENSRRDYYDKSKSHDAGKYHSKSSRRSKSRSRSRSRSRSVQTL
RASADRFPSPLKDEGPVRTSASSNLAKLKDMYGDLSTQKEDAEYRNPPNKINGAEEVIRL
GGSTWK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggagataccaattaagccaattgatcagctactggagaaggttctttgtatgaacatt
ctttcctctgattactttaaagagctttatcgtgttaaaactttttatgaagttattgac
gagatttactatcaagtggaccatgtggaaccatggatgactggaaattgtcgaggtccc
tctacagcattttgccttctttataagtttttcacaatgaaactcactgccaagcaaatg
agtgttctattggatcacgaagattctccttacatcagagcaattggattcctctaccta
aggtatgctgcagatccaaagacgctatggggttggtttgaaccgtatattaaagatgag
gaggaattttctcctggatctaatgaacgaaagacgacaatgggtgtttatattcgtgat
ttacttcttggacagtactattttgatactcttttcccgcgcatccctgtcccggtaatg
cggttgattcaagccaatctcgagaagttgaagcttccaaccaagcatgctggtgtaact
ggggagaccacccggggatctgatgacaccgctcggcgaccaccatctgttaaggcatcc
ctttccgtctcctttggtcagcgtgctcctcatcgtgcatcaactagggactcatctcct
gtccgtcgcaatatgcccccgccttctaatggtagaaaatatgatgatgatgcacgaaga
tctcctagcagacctcgtagcaaaagtcgtgacttgggggataatgaatatggagaccgt
gatcgagacaggggaagagacagggacagggacagggatgggagtaggggaagagatagg
gaaagggttagagacagggaacgtgacagtgatggatacagggataggaacggagaaagt
gatagaagtagagacagagagcgacgacttgactatgatagaagatccagggaaaacagc
aggagggattattatgataagagcaagagccatgatgctggtaaatatcatagcaaaagt
tctcgtagaagcaagagcagaagtaggagcaggagcaggagtcgtagtgttcagacacta
agagcatctgctgatcgtttcccaagtccgcttaaggatgaaggcccagttagaacatct
gcatctagcaacttggcgaagcttaaagatatgtatggagatttaagcacacaaaaggag
gatgctgaatacagaaaccctcctaacaagattaatggtgccgaggaggttattagactt
ggcggttctacttggaagtag
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