Apium graveolens (celery): 141678977
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Entry
141678977 CDS
T11340
Name
(RefSeq) THO complex subunit 4B-like isoform X1
KO
K12881
THO complex subunit 4
Organism
agrv Apium graveolens (celery)
Pathway
agrv03013
Nucleocytoplasmic transport
agrv03015
mRNA surveillance pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141678977
09122 Translation
03013 Nucleocytoplasmic transport
141678977
03015 mRNA surveillance pathway
141678977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141678977
03041 Spliceosome [BR:
agrv03041
]
141678977
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141678977
TREX complex
141678977
Spliceosome [BR:
agrv03041
]
Complex C
Other components
EJC/TREX
141678977
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141678977
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_9
Motif
Other DBs
NCBI-GeneID:
141678977
NCBI-ProteinID:
XP_074341549
LinkDB
All DBs
Position
8
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AA seq
258 aa
AA seq
DB search
MAESLLDMTLDQLIQKNKAFNTSSSATARSTVRGRGAAAGKASRGRGRAAGADSSAPGPT
RRAPNRFQPRTTPYFTPQGLNQMQMQEVLIPGGMDADSGTKLYISNLDYGVTNEDIKVLF
SEVGELRRYSIHYDKSGRSKGTAEVAFVRQSDAFAAVKRYSGVQLDGKPMKIEMVGVKLV
APTNIAMPPTTNGFPGNTGGAFRSRQQRVAGRGRDRGSNGGRGAARGRGRGRGQGEKVSP
EDLDADLEKYHQEAMQLN
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atggcggagagtttactcgacatgactctcgatcaactcatccagaagaacaaagctttt
aatacctcctcctccgccaccgctagatccaccgttcgtggccgcggcgccgccgccgga
aaagcttctcgtggccgtggtagagccgccggtgctgattcctctgctcctggacccact
cgtcgtgctcctaatcgctttcagcctcgaacgacgccgtatttcactcctcagggattg
aatcagatgcaaatgcaagaagtgttgataccgggaggaatggatgcggattcagggacg
aagctctatatctcgaatttggattacggagttactaatgaagacatcaaggtgctattc
tccgaggttggtgagttaagaagatactctattcactatgacaagagtgggagatcaaag
ggaactgccgaagttgctttcgtgcgtcaatcagatgcttttgctgctgtgaagagatac
agcggtgtccagcttgatgggaaacccatgaagattgagatggttggagtcaagttagtt
gcccctactaacattgccatgccaccaactacaaatggctttccaggaaacactggaggg
gctttccggagtagacaacaaagggttgctggcaggggacgtgatcgtggcagcaatggt
ggtcgtggggctgcgcgaggtcgtggaagaggcagaggacaaggtgagaaggtgtcgcct
gaagatcttgatgctgatttggaaaagtatcatcaagaggcaatgcagttaaactaa
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