Apium graveolens (celery): 141680947
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Entry
141680947 CDS
T11340
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141680947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141680947
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141680947
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141680947
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Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
T2SSE
Cas3-like_C_2
nSTAND_NTPase5
AAA_16
Flavi_DEAD
AAA_7
SRP54
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
141680947
NCBI-ProteinID:
XP_074343123
LinkDB
All DBs
Position
8:265920236..265923300
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AA seq
859 aa
AA seq
DB search
MKRRIDNVCSVSETIKKRRFEKEVNATKIKKLRKLSRRDYLKKRGIKKLEELRDDIEDEE
YLFQNVKLTEAEKFRLRHKKQVYDVVKKKHADYDMNEYIMPNAYDQEGCVNQEKRFSVAV
ERYREDKSDGTDTMNPNVEQQAWEDQQISKATMKFGSKERKRDDYDFVFENQIEFIKHEV
MNGGSCVREACDDSVENFKAKSAFEKLQADRRSLPVYRYREELLKAVEEHQVLIVVGETG
SGKTTQIPQYLHEAGYTKRGRIGCTQPRRVAAMSVSARVSQEMGVKLGHEVGYSIRFEDC
SSEKTVIKYMTDGMLLREFLGEPDLSSYSVVMVDEAHERTLSTDILFGLVKDIARSRPDL
KLLISSATLDAKKFSDYFDCAPIFNVPGRRFPVEINYTKAPEADYLDAAIVTALQIHVTR
PIGDGDILVFLTGQEEIEMAEEILKRRTRGLGTKIGELIICPIYANLPTELQAKIFEPTP
KSARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYSPRTGMESLLVTPISKASANQRAG
RAGRTGPGECFRLYTSHNYHNDLEDNGVPEIQRTNLANVVLNLKSLGIDDLVNFDFIDPP
PEASLLKALELLFALSALNKKGELSKVGRKMAEFPLDPMLSKMIVASEKYRCSDEIISIA
AMLSIGSSIFYRPKDKQVHADNARMNFNMGNVGDHIALFRIYSSWKETNFSTQWCYENYI
QARSMKRARDIRDQLEGLLDKVEIEVMSSSGDLEAIRKAITSAYFPNCARLQKNGSYTTL
KHHQTVHIHPSSGLAQVLPRWIVYHELVLTTKEYMRQVTEIKPEWLIDVAPHFYQLNDVE
DTGSKKMPRAEGLASDIRR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtagaatagacaatgtgtgttcagtttctgagacgatcaagaagcgacgcttt
gaaaaagaagtgaatgccacgaaaataaaaaagttaagaaaactttctcggcgagattat
ttgaagaaaagagggataaagaaactagaggagttgagagatgacattgaggatgaggag
tatctgtttcagaatgtgaaattgacggaagcagagaaatttagattaagacacaagaaa
caagtttatgatgttgttaagaagaagcatgctgattacgacatgaatgagtacataatg
cctaatgcttatgatcaggaaggttgtgttaatcaggagaaaagattttctgtggctgtc
gagcgttacagggaagataagagtgatggtacagatacgatgaacccgaacgtggagcaa
caggcgtgggaggatcagcagattagtaaggccactatgaaatttggctcgaaagaaaga
aagcgtgatgattatgattttgtctttgaaaaccagattgagttcattaaacatgaagtg
atgaatggtggaagttgtgttagagaggcctgtgatgactcagttgaaaattttaaggcc
aagtcagcattcgagaagcttcaggctgacaggagaagtttaccagtgtatcgatatcga
gaggagttgctgaaagcagttgaagaacaccaagttctcattgttgttggagaaactggt
tccgggaagactactcagatacctcagtatctccatgaggcagggtacacaaaacgtgga
aggattggatgtacgcagccacgtcgtgttgctgctatgagtgtttcggctagagtgtct
caggaaatgggagttaaacttggacatgaggttggctattccattcgttttgaagattgc
tcgtctgagaagacggttattaagtatatgacagatggaatgttgttgcgagagtttcta
ggggagcctgatctttctagctatagcgtcgtgatggtggatgaggctcatgaaagaaca
ctttcaactgatattttgtttggtttagttaaggatatagccagatctcgtcctgatctt
aagttgcttatctctagtgcaactcttgatgctaagaagttcagtgattattttgattgt
gctccgatttttaatgtcccgggaaggaggtttcctgttgagataaattacacaaaagcg
ccagaggctgattacttggatgcagcaattgtcacagctcttcaaattcacgtgactcgg
cctattggagatggtgatatactggtctttctcactggccaggaggagattgagatggct
gaggagattcttaagcgtcggacgagggggttaggaacaaagataggagagctgattata
tgcccaatatatgccaaccttccaacagagcttcaggcaaagatatttgaacctactccg
aaaagtgcaaggaaggttgtcctggccacaaatattgcagaaacatcattgactattgat
gggatcaaatatgtcattgatccgggttttgtgaaaatgaaatcttacagtcctcgtact
gggatggagtcattgctggttaccccaatttcaaaagcatcggctaatcaacgggctgga
agggctggtcggacaggccctggggagtgctttaggctttatacttctcacaattatcat
aatgacttagaagataatggtgtgcccgagatacaacgaacaaatcttgcaaatgtagtt
ttgaatctaaagagccttggcattgatgacctggtgaattttgatttcatagatccacca
ccagaagcttctttattgaaagctctggagcttttatttgcattgagtgcgcttaacaag
aaaggcgagttatctaaggtggggaggaaaatggctgagtttcctcttgatccaatgctg
tcaaagatgatagttgcttctgaaaagtatagatgttctgatgagatcatctcaattgct
gcaatgctttcaattggaagttcaatcttttatcgtccaaaggacaagcaggttcacgct
gacaatgcacgaatgaattttaacatgggcaatgtaggagatcatattgcattattcagg
atatacagttcttggaaagaaaccaacttctcaactcagtggtgttatgagaactatatc
caggcccggagcatgaaacgtgccagagatatacgagatcagttggaggggttactggac
aaggttgaaattgaagtgatgtcaagttcaggtgatttggaagctataaggaaagccata
acatcagcctactttccaaactgtgcaaggctgcagaagaatggatcatacacaacttta
aaacatcatcaaactgtacatattcatcctagttcaggtttagcacaggtacttccaaga
tggattgtgtaccatgaattagtactcacaactaaagagtacatgaggcaggtgactgaa
attaaaccagagtggctgattgatgtagctcctcacttctaccagctaaatgatgtcgaa
gatactggatcgaagaaaatgcctcgtgcagagggtctcgcttctgacataagaagatag
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