Apium graveolens (celery): 141683923
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Entry
141683923 CDS
T11340
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141683923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141683923
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141683923
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141683923
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
T2SSE
ABC_tran
PWI
AAA_16
SRP54
AAA_7
Flavi_DEAD
AAA_23
Motif
Other DBs
NCBI-GeneID:
141683923
NCBI-ProteinID:
XP_074344832
LinkDB
All DBs
Position
9:complement(37554158..37567315)
Genome browser
AA seq
1046 aa
AA seq
DB search
MGSDLKIWVSDKLMSLVGYSQSTLVQYIISLSKNAKSPADIADALKDDLSACSVADLQAF
SRELFAKGDRGRPAPNAYLQQEREAAKLVQKQSMYTLLEDDDVDNGSVGSSAVDESKTRD
SKRKRFRKKTELQDDEDDEVVIPKKDDRRVKRRTAQPEDDSDSEEERLRDQREREELEQN
LRERDAAGTRKLTEHKLTRKEEEEEIRRSNALGKGDTDDLRIVSRQEYLKKREQKKLEEI
RDDIEDEQYLFENVKLTEAELRELRYKKQIYDLAKKQTEETDEINEYRMPDAYDQEGGVN
QEKRFSVAVERYRDLNAAEKMNPFAEQEAWEDHQIGKATMKFGSKDKKHDDYEFVFENQI
EFIQDEVMKGDNYDGEAYGDSPDESIAKSAFEKLQADRKTLPVYPYREKLLEAVNEHQVL
VIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVSARVSQEMGVKLGHEVGY
SIRFEDCTSEKTVIKYMTDGMLLREFLGEPDLSSYSVVMVDEAHERTLSTDILFGLVKDI
ARFRPDLKLLISSATLDAEKFSDYFDSAPIFIVPGRRFPVEINYTKAPEADYLDAAIVTA
LQIHVTQPPGDGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQA
KIFERTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYSPRTGMESLLVTPISKA
SANQRAGRSGRTGPGKCFRLYTSHNYYNDLEDNTVPEIQRTNLANVVLSLKSLGIHDLVN
FDFMDPPPEASLLKALELLFALSALNKKGELTKVGRKMAEFPLDPMLSKMIVASDKYKCS
DEIISIAAMLSIGSSIFYRPKDKQVHADNARMNFHMGNVGDHIALLKVYSSWKETNFSTQ
WCYENYIQVRSMKRARDIRDQLEGLLERVEIELMSNPGDLEAIRKAITSGYFPHCSRLQK
NGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYYELVLTTKEYMRQVSELKPEWLIEIAPHF
YQLKDVEDTGSKKMPRGEGLASDIKR
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgatttgaagatttgggtttctgacaaattgatgtctcttgttggttattct
caatctactcttgttcaatacatcattagtctctcaaagaatgctaaatcacctgctgac
attgctgatgcccttaaagatgatttgagtgcctgttctgttgcggacttgcaggcgttt
tcccgtgagttgtttgctaaaggcgatagagggaggcctgctccaaatgcttatctgcaa
caagaaagggaggcggctaagcttgtgcagaagcaaagtatgtatacgcttttggaggac
gatgatgttgataatggcagtgttggtagttctgcagttgatgagtccaagacgagggat
tcgaagaggaaacggtttaggaaaaaaactgaacttcaagatgatgaagatgatgaggta
gtcatacctaaaaaagatgacaggcgggttaaaaggcggactgctcagcccgaagatgat
tctgactcagaggaagaaaggttgcgtgatcaaagagaacgagaggagttagaacaaaac
ttaagagaacgggacgctgcagggacaagaaagctaacggagcataaattaacacggaaa
gaggaagaagaggaaatcaggagatctaacgcattgggaaaaggtgacacggacgattta
agaatagtttcaaggcaagagtatctgaagaaaagggagcaaaaaaaactcgaggaaatc
agagatgacatagaagatgagcagtatctattcgagaatgtgaaattgaccgaagcagaa
ttgcgtgaactaagatacaagaaacaaatatatgatcttgctaagaagcaaacggaagag
acggacgagataaatgagtacagaatgccagatgcctatgaccaggaaggcggtgtaaat
caagagaagagattttctgtggccgtggagcgttacagagatctaaatgctgcagagaaa
atgaacccattcgcagagcaagaagcatgggaggatcatcagattggcaaggcaacaatg
aaatttggctcaaaagataaaaagcatgacgactacgagttcgtctttgaaaaccagatt
gagttcatacaagatgaagtaatgaagggtgataattatgacggggaggcgtatggcgat
tcacctgatgaatctattgcaaaatcagcatttgagaaacttcaggctgataggaaaact
ttaccagtctacccatatagggaaaagttgcttgaagctgttaatgaacatcaggttctt
gtaattgttggagaaactggttccggaaagactacacagatacctcagtatctccatgaa
gctgggtatacaaaacgtggaaagattggatgtacccagcctcgtcgtgttgctgctatg
agtgtttctgctagagtgtcacaggaaatgggagttaaacttggacatgaggttggttat
tcaattcgctttgaagattgcacttctgagaagacagttatcaaatatatgacagatgga
atgttgttacgggaatttttaggggaacctgacctttcaagttacagtgttgtgatggtg
gatgaggctcatgaaagaacgttatctactgacattttgtttggtttagttaaggatata
gctcgttttcgtcctgatctcaagttgctcatctctagtgcaactcttgatgccgagaag
ttcagtgattattttgacagtgctccaattttcatagtgccgggaaggaggttccccgtt
gaaataaattacacaaaagcaccagaggcagactacttggatgcagccatcgtcacagct
cttcaaattcacgtgactcaacctcctggagatggtgatatattggtttttcttactgga
caggaagaaattgagacagctgaggagattctgaagcatcggacaaggggtttaggaaca
aaaatagcagagctgattatttgccctatatatgctaaccttccaacagagctgcaggca
aaaatatttgaacgtactccggaaggtgcgaggaaggttgtcctggccacaaatattgca
gaaacctcattgacaattgatgggattaaatatgtcattgatccaggttttgtcaagatg
aaatcttacagtcctcgtactggaatggagtcattactggtcacccctatttcaaaggca
tcggcaaatcaacgtgctggtcgatctggtcgtacaggtcctggaaaatgcttccgactt
tatacttcccataactattacaatgacttggaagataacacggtgcctgaaatacaacga
accaaccttgcaaatgttgttcttagtctaaagagccttggcatccatgatctggtgaac
ttcgatttcatggatccacccccagaagcgtctttattgaaagctctcgagcttctattt
gcactgagtgcgcttaataaaaaaggagagctaactaaagttggaaggaaaatggctgag
tttcctcttgatcccatgctgtccaagatgattgttgcttctgacaagtacaaatgttcg
gacgagatcatatcaattgctgcgatgctttcaattggaagttcgatcttttatcgtcca
aaggacaaacaggttcatgcagacaatgcccgaatgaattttcatatgggcaatgtcgga
gatcatatcgcgttacttaaggtatacagttcttggaaggagaccaacttctcgactcag
tggtgctatgaaaactatatccaggtcaggagcatgaagcgtgctagagatattcgagat
cagttggaggggttactggagcgggtcgaaattgaattgatgtcaaatcctggtgatttg
gaagctatacggaaggccataacatcaggatactttcctcactgttcaagacttcagaag
aatggatcttatagaactgtaaaacatcctcaaactgttcatatccatccgagttcaggt
ctagcacaggtacttccaagatgggttgtgtactatgagttggtacttacgactaaagaa
tacatgcggcaggttagcgaactaaaaccagaatggctgattgaaatagctcctcatttt
taccagctaaaggacgttgaagatactggatcgaagaaaatgccccgcggtgagggtctc
gcatctgacatcaaaagatag
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