Apium graveolens (celery): 141684053
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Entry
141684053 CDS
T11340
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03022
Basal transcription factors
agrv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
141684053
09124 Replication and repair
03420 Nucleotide excision repair
141684053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agrv03021
]
141684053
03036 Chromosome and associated proteins [BR:
agrv03036
]
141684053
03400 DNA repair and recombination proteins [BR:
agrv03400
]
141684053
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
141684053
Transcription machinery [BR:
agrv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
141684053
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
141684053
DNA repair and recombination proteins [BR:
agrv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
141684053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
141684053
NCBI-ProteinID:
XP_074344986
LinkDB
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Position
9:258331593..258339291
Genome browser
AA seq
756 aa
AA seq
DB search
MKFELEDVTVYFPYDNIYPEQYHYMLELKRSLDAKGHSLLEMPTGTGKTIALLSLITSYS
LSKPFNPIKLVYCTRTVHEMEKTLAELKLLHKYQVECLGKSANILAIGLSSRKNLCVNEK
VLSAENRDSVDAGCRKLTASWVREKAVENNIETCSFLENYDRQGEGLLLPSGVYTLQDMR
LLGKEKGWCPYFLARHLVKFANVVVYSYQYLLDPKVAGIISKEMEKECVVVFDEAHNIDN
VCIEALSVSVRRQTLEGATRNLSKMSQEIDRLKESDAGRLRSEYNRLVDGLAQRGNLAVT
DNWLANPILPDDILKEAVPGNIRRAEHFLSVLRRLVQYLKGRLETENVVKEGPVTFVGSI
TAQVGIDKKMLQFCYDRLQSLMMTLMITDTEEFLHIQTICDFATLVGTYTRGFSIIIEPF
DERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSF
TMSLTRDCICPMVISRGSDQLPVSTKFDLRSDPGVERNYGRLLLEMVSVVPDGVVCFFVS
YSYMDGIVNSWNELGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVAR
GKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAA
QCVGRVIRSKADYGMMIFADKRYTRHDKRSKLPGWILTHLREAHLNLSTDMAVHIAKDFL
RKMAQPYDKTGGGGKKTLLSQEDLEKMGSGNTDMLF
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcgaacttgaagacgtaaccgtatacttcccatacgacaacatctaccctgaa
caataccactatatgctcgaactcaaacgctctctcgacgcaaaaggccactctctcctc
gaaatgcccaccggcactggcaagacaatcgccttactctctctcatcaccagttactct
ctctctaaaccttttaatccaattaaattggtttactgtactcgcactgttcacgagatg
gagaaaaccctagctgaattgaagttgttgcataagtatcaggttgagtgtttggggaag
tctgccaatattctcgcgattggcttgtcgtctcggaagaatttgtgtgtgaatgagaag
gttttgagtgcggagaatagggattcggttgatgccgggtgtaggaaactgactgctagt
tgggtcagggagaaggcagtggaaaataatatcgagacttgtagttttttagagaattat
gatcggcaaggggaggggttgttgttgccttccggtgtctatacattgcaggacatgagg
ctattagggaaagagaaaggatggtgcccatactttttagctcgccatttggtaaaattt
gccaatgtagtggtttatagctaccagtacttgcttgatcccaaggttgcgggcattata
tcaaaagagatggaaaaagagtgcgttgtagtgtttgatgaggctcacaatatcgataat
gtttgtatcgaggcccttagtgtaagtgtgaggaggcagacacttgaaggtgctactagg
aatctcagtaagatgtctcaggagattgataggttgaaggaaagtgatgctggtagatta
cgctctgaatacaatcgccttgttgatggtttggcacagcgaggaaatctagctgtcacg
gataactggcttgcaaatcctatattgcctgatgatattttgaaggaagcagtgcctggg
aatatacggcgggcagagcatttcttgtctgtattacgcagattagttcaatatcttaaa
gggagattagaaactgagaatgtagtgaaggagggacctgttacttttgttggatctata
actgcccaggttgggattgacaagaaaatgttgcagttttgttatgatcgactccagtct
ctgatgatgacactgatgataactgacacagaggaattcctacatattcaaacaatttgt
gactttgcaacgcttgtagggacatacactcgggggttttcaatcatcattgaacctttt
gatgaaagaatgccacacattcctgatcctgtgttgcagcttagctgtcatgatgcttca
cttgcaattaagcctgtctttgaacgattccaatcagttgtcatcacttctggaacactg
agcccaatcgatctatacccccgtcttctcaatttcaatcctgttgttagtcgaagcttt
acaatgtcgttgacaagggattgtatttgcccaatggttattagtcgtggaagcgatcaa
cttcctgttagcacaaaatttgatctgcgaagtgatcctggtgttgaaagaaattatggg
aggcttttgttagagatggtgtccgttgttccagatggagttgtgtgtttcttcgtaagt
tactcatatatggatggcatagtaaatagttggaatgaattgggaattctgaaggagata
atgcaacataagcttgtgttcattgagacacaggatgttgttgaaactactttggccctg
gacaattatcggagggcttgtgattgtggaagaggtgctgtcttcttctctgtggccagg
ggaaaggtagcagaaggcatagacttcgatagacattatggcagacttgttattatgttt
ggtgttcctttccagtacactttaagcagaatattacttgcacggttggagtatttaagg
gagaccttccaaataaaagaaggcgatttcttgacttttgatgccttgaggcaggctgct
caatgtgtggggcgtgtcattcgttcaaaagcagattatggaatgatgatatttgcagac
aaaaggtacacccgtcatgacaagcgctcgaagttgccaggatggatattgacacattta
cgtgaagcacacctaaatttgagtaccgacatggcggtgcatatagcaaaagatttcttg
cgcaaaatggcccaaccatacgataagactggcggtggtggtaagaagaccctgttgtca
caagaagacttggagaagatgggcagtggcaatactgacatgctgttttga
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