Apium graveolens (celery): 141687289
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Entry
141687289 CDS
T11340
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141687289
09123 Folding, sorting and degradation
03018 RNA degradation
141687289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141687289
03041 Spliceosome [BR:
agrv03041
]
141687289
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141687289
mRNA degradation factors
5'-3' decay
Lsm complex
141687289
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
141687289
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
141687289
NCBI-ProteinID:
XP_074348608
LinkDB
All DBs
Position
9
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AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKSRADRKPPGAGGRGRGRGREDGTGGRGAKGMGRGMDD
GLARGSSGGRGRGGPSGRTGGSRGGRGGR
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttctctgcttaagaccgctcaaggtcatcccatgttggtggaacttaag
aatggagaaacctacaatggacatttggtcaactgtgatacttggatgaacatccatctg
cgagaagttatatgtacctctaaggatggagataaattttggagaatgcctgaatgctac
atcagaggcaatacaataaaatatcttagagttccagacgaggtgattgataaggttcag
gaagagaaaagccgtgctgacagaaagcctcctggtgccgggggtcgtggaagaggaaga
ggtagagaggatggtactggtgggcgtggagccaaaggcatgggccgtggcatggatgat
ggacttgcaagaggttcaagtggaggaagaggcagaggaggtcccagtggaagaacaggt
ggaagcagaggtggacgtggtggtcggtag
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