KEGG   Apium graveolens (celery): 141687289
Entry
141687289         CDS       T11340                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03018  RNA degradation
agrv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    141687289
  09123 Folding, sorting and degradation
   03018 RNA degradation
    141687289
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:agrv03019]
    141687289
   03041 Spliceosome [BR:agrv03041]
    141687289
Messenger RNA biogenesis [BR:agrv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     141687289
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     141687289
Spliceosome [BR:agrv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    141687289
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 141687289
NCBI-ProteinID: XP_074348608
LinkDB
Position
9
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKSRADRKPPGAGGRGRGRGREDGTGGRGAKGMGRGMDD
GLARGSSGGRGRGGPSGRTGGSRGGRGGR
NT seq 450 nt   +upstreamnt  +downstreamnt
atgcttcctctttctctgcttaagaccgctcaaggtcatcccatgttggtggaacttaag
aatggagaaacctacaatggacatttggtcaactgtgatacttggatgaacatccatctg
cgagaagttatatgtacctctaaggatggagataaattttggagaatgcctgaatgctac
atcagaggcaatacaataaaatatcttagagttccagacgaggtgattgataaggttcag
gaagagaaaagccgtgctgacagaaagcctcctggtgccgggggtcgtggaagaggaaga
ggtagagaggatggtactggtgggcgtggagccaaaggcatgggccgtggcatggatgat
ggacttgcaagaggttcaagtggaggaagaggcagaggaggtcccagtggaagaacaggt
ggaagcagaggtggacgtggtggtcggtag

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