Apium graveolens (celery): 141688800
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Entry
141688800 CDS
T11340
Name
(RefSeq) uncharacterized protein LOC141688800
KO
K06100
symplekin
Organism
agrv Apium graveolens (celery)
Pathway
agrv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141688800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agrv03021
]
141688800
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141688800
Transcription machinery [BR:
agrv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141688800
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
141688800
U7-dependent histone pre-mRNA processing factors
141688800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
PRO8NT
mTOR_dom
TPR_DNAAF5
Motif
Other DBs
NCBI-GeneID:
141688800
NCBI-ProteinID:
XP_074349013
LinkDB
All DBs
Position
10:150575048..150590698
Genome browser
AA seq
1316 aa
AA seq
DB search
MVAIMAAKLREKVAGLLDSAKSSRDLNSKLQSLHHLNLIFSDDVDTDLLSEFLPPLLDFH
FDSSSPFRKFVIEIIGSVGLKHVEFLPDIVPVLITALQDSTPAVARQSGTCGINLFRSTL
VRIAIQGIYSSELDDSLKLSWAWMLKFKDEIYTLASKPGSDGRRLVALKFVAATILLYTP
DPSGSSEPPSNHSYEEKFDEFNMAWLRRGHPVLDIGDSSTEASKSLDILLDQLRYSTVKS
LNNSAMIVLINSLSEIARKRPALYGRIMAVLLALDPSSSANKGMHVLGAHYPLKNAFLAC
LKCTHPGAAPWRDRLVGALKEMKAGDLAEEALHEVCQINGSVGYKNNVPAEEEKPLLETV
DYMSTDIRRKRSVTPDVSDLAEEDEISGKRARRTPEAKNDQDKLSSSVVSTSRGEGDNGP
VQQLVSMFAALVSQGEKAVGSLQILISSISADLLAEVVMANMRHLPSVRPKDEDLELDKD
SRTSYGFRDTQFKKLSSFLREIQSTSSPFQQRDSVLDAHPAASNDLENPKLEEKEQKAIT
LTHNDARGPLINETAIVPAPTDVPVSSCEGVPSANDVSLAIAPKIPDIGLPENGIPGLES
STHSYGLSETLAVSSLVATDLEEASQDQVNSLGRSSQDIIPSISTDRSEELSPKAACMDT
TSINSSTATSLRLPSQLVLPKMSAPVISLDGEQMDSIQKMSFMRIVEAYKHIAVAGGSQV
RFSLLAYLGVALPFDVDPWKMVETHVLSDYMNHEGHELTLRVLYKLFGEAEANADFLYST
NATSVYEMFLLKVAETLRDAFPASDKSLSRLLGEVPYLPKSILKLLECLCCPGNNDKDEK
VVHSGDRVTQGLSTVWSLILLRPPTRDVCLKIALQSAVHHLEEVRMKAIRLVANKLYPIS
SLTQSIEDYAKEMMISATSAARATAIESQKEHLNVSVSEATVPKDVSSDTHQLNTCESSS
LSSVSEKQRCMSLYFALCTKKHSLFREVFVVYDSMSEEAKQAVHGQIPILVRTIGTSSQL
LEIISDPPTGSGNLLLQVIQTLTDGTVPSPELISTIRKLYDSNVKDAQILIPVLPFLPKH
EVLLIFPHLVNLPLDKFQAVLARALQGSSQSGPVLTPGEVLIAIHKVDPEKEGIPLKKVT
DACTACFEQGQIFTQQVLAEVLNQLVEQIPLPLLFMRTVLQTIGVYPSLVDFVMNILSRL
VSKQIWKTPKMWAGFLRCVLSTMPQCFGVLLQLPPSQLENAMNKIPVLKAPLVAHASRPD
IQSSLPRSVLVVLGIVSDSQSASPMETAQPPSAEGSTSDKMLESEKSKETSTISET
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atggtagcaatcatggcagcaaaactacgcgaaaaagtcgccgggcttctcgattccgcc
aagtcatcccgggacctcaattccaagctccaatccttacaccacctcaatctcatcttc
tccgacgatgtcgacactgatttactctccgaattcctcccgcctctcctcgatttccat
ttcgattcgtcgagtccgttccgcaagttcgttattgagataatcggtagtgttggattg
aagcatgtggaatttttacctgatattgtgcctgtgttgatcactgctctgcaagatagt
acaccagctgttgctcgacaatctggtacatgtgggatcaatttgttccgaagtacactt
gtcagaattgcaatccagggtatttactctagtgagttggatgattcgcttaagttgtcg
tgggcttggatgttgaagtttaaggatgagatatacactctagcttctaagcctggaagt
gatggaagaaggctggtagcactgaaatttgtggcagcaactatacttctctacactcct
gatcctagtggttcttctgaacccccgagtaatcacagctatgaagagaagtttgatgag
ttcaatatggcatggcttcgccgaggtcatcctgtactagatattggagattcatcaact
gaagccagtaaaagtttggatatattactcgatcagctacgatattcaacagtaaaatca
cttaataactcggcaatgatcgtgctcattaacagtctgtcagaaattgcaaggaaaagg
cctgctctttatggtcgtattatggcagttttacttgccttagatccttccagctctgct
aataaagggatgcatgtcctgggcgcacattatcctttgaagaacgccttccttgcctgc
ttgaagtgcactcatcccggtgctgcaccgtggcgggatcggttagttggtgcacttaaa
gaaatgaaagcaggagacttggccgaagaagctctacatgaagtgtgccagattaacggc
agcgtaggatataaaaacaacgtgcctgctgaggaggaaaaaccattgctggaaacagtt
gattacatgagcactgatatcaggaggaagaggtcagtgacaccggatgtcagcgatttg
gcggaggaggatgagatatctggaaagcgtgccaggcgaacaccagaagcaaaaaatgat
caggataaattgtcttcgagtgtagtatcaacatctagaggtgagggggataatggtcct
gtgcagcaacttgtttctatgtttgctgcattagtttcacagggtgaaaaggctgtggga
tccttgcaaatccttatatctagtatctctgctgatttgcttgccgaagtagtaatggcc
aacatgcgacaccttccatcagttcgtcctaaagatgaagacctggaattggacaaggat
tcacgtacaagttatgggttcagggatactcaattcaaaaaactatcatcatttttgagg
gaaattcagtccacgtctagccctttccagcagagagattctgtattagatgctcatcca
gctgcatctaatgatttagagaatcctaaactggaagagaaggagcagaaggcaattact
ctgacgcacaatgatgcaagaggacccctgattaacgaaactgcgatagtaccggcgcct
actgatgttcctgtatcctcttgtgaaggtgttccgtcagcaaatgatgttagtttagct
atagcacctaaaattcctgatattggacttcctgagaatgggataccaggtctggaatca
tctactcattcctatggtttatcagagacgttggctgtttcctccttagttgcaactgat
ttagaagaagctagtcaagaccaagtaaatagtttgggcaggtcatcacaagatatcatt
ccgtcaatatcaactgataggtccgaggagcttagcccaaaagcagcttgcatggataca
accagcataaactcctcgacagcaacttcccttagattaccttctcaattggttctacca
aagatgtcagcaccggttattagccttgacggggaacagatggatagcattcaaaagatg
tcttttatgcgcattgttgaggcttataagcacatagcagttgctggtggttcgcaagtc
cgattttctttacttgcctatttaggagttgcgcttcccttcgacgtggacccttggaag
atggtcgaaactcatgtcttgtcagattatatgaaccatgagggccatgagttgacattg
cgtgtactctacaagttatttggtgaggcagaagccaatgccgacttcctttactcaaca
aatgctacatctgtgtatgagatgtttctattgaaagtggcggaaacactccgagatgct
tttccagcttctgacaaatccttaagtagattgcttggtgaggttccttatctgccgaaa
tcaatactgaagttgctggaatgcttgtgctgtcctggaaacaatgataaagatgagaag
gttgtacatagtggtgatcgagttactcaaggtcttagcactgtatggagcttaatattg
cttagaccgcccactcgagatgtgtgcttgaaaattgctttacagagtgcagttcatcat
ttggaagaagtgcgtatgaaggcaatacgtctggtggccaacaagctttatcctatatca
tcactcacacaaagtattgaagactatgctaaagaaatgatgatctccgcaacaagtgct
gccagggcaactgccattgaatcacaaaaggaacatttaaatgtaagtgtttcagaagcc
acagtccctaaagatgtatcctctgatactcatcagttgaacacatgtgaaagcagttcg
ctgtcttcagtttctgaaaagcagcgatgcatgtctttgtatttcgccctttgtacaaag
aagcactctcttttccgcgaagtatttgttgtttacgatagcatgtcagaggaggcaaaa
caggcagttcatggccaaatcccgattcttgtacgcacgattggcacgtcatcgcagctt
cttgaaattatttctgatccacctactggtagcgggaaccttcttttgcaggttatacaa
acgctaacagatgggacagtcccttctccagaactgatttctaccattagaaagttatat
gattcaaatgtgaaggatgcacaaattcttattccggtgttaccatttctcccaaaacac
gaggtgttgcttatatttccgcatcttgttaatcttcctctggataaatttcaagccgtg
cttgctcgtgctttacagggatcatctcagtctggtcctgttcttactcctggtgaagtt
ttgattgctattcataaggtggaccctgaaaaagaaggaattcccttgaagaaggttacc
gatgcttgcactgcgtgttttgaacaaggtcagatattcacccaacaagtccttgcagaa
gtgctgaatcagttggttgagcagattcctcttcccttattatttatgcgaacagtatta
caaactataggtgtttatccatcactggttgactttgtaatgaatattctctcccgtctt
gtgagcaagcagatatggaaaaccccaaagatgtgggcaggatttttgagatgtgttctc
tcaacgatgccacagtgttttggtgttttgcttcagttacccccatcgcagcttgaaaat
gctatgaataaaataccagtactgaaagctccactggttgctcatgctagccgaccagac
atacagtcttcacttccaagatctgtgcttgtggtgcttggtattgtatctgattctcag
tccgcgagtccaatggaaacagctcagcccccaagtgcagaaggaagcacttcggacaag
atgttggagtccgaaaaatccaaggaaacatccaccattagtgaaacatag
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