Apium graveolens (celery): 141689931
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Entry
141689931 CDS
T11340
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv04120
Ubiquitin mediated proteolysis
agrv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
141689931
04120 Ubiquitin mediated proteolysis
141689931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
agrv04121
]
141689931
Enzymes [BR:
agrv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141689931
Ubiquitin system [BR:
agrv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141689931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_Vps41
zf-RING_16
zf-RING_11
zf-RING_5
GTP-bdg_M
Integrase_2
Motif
Other DBs
NCBI-GeneID:
141689931
NCBI-ProteinID:
XP_074350565
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All DBs
Position
10:227680034..227690118
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AA seq
548 aa
AA seq
DB search
MMRLQTYAGVSLIATLAVVYHAFSSRQQFYPAMVYLSTSKVSLVLLLNMGLVVMCILWQL
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLSMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMGFLFLLDSLFLYNSVKYLIETRQASVSLFFAFEYM
ILATSTVSTFVKYVFYVSDMLMEGQWEQKAFYTFYLELIRDLLHLSLYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRFADYIRYRKIASNMNDRFPDATPEEIDSSDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGASTAGSHANVHQQGTNMSNTP
SQGSNGDGAANANISPQQARLRAAAAAAAVYEKSYVYPSPSTLIWSPGYALPLQTDRSEA
GSSIGNPSGETSSGPNTLKPQFATVGGPAEFSFPQFPKPTPSSSQAFDIDAKFEQHFGSN
RYISDSQLEEQRKLIQRQIEVLQEQLQLLQKPNADRSAEMDQTATANKKGKGLASSSSSS
SSNSDRED
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttacaaacgtatgcaggggttagcttaattgctaccctagctgttgtttat
catgcttttagtagtcgccagcagttttatccggcaatggtttatttatcgacttcaaag
gtcagtttggtgcttctgcttaatatgggcctggttgtgatgtgcatattgtggcaactc
actaagaagattttccttgggtcgcttcgggaagcggaggttgaaaggcttaatgagcag
tcatggcgggaagtgatggagatactttttgctattactattttccgtcaggatttttcg
gttacctttctttctatggttacggctcttttgttgataaaggctttgcattggttggct
cagaagagagttgaatatattgaaacgactccgtcagttcccatgttgtctcatatccgg
attgtctctttcatggggttcctttttctacttgacagtctctttctgtacaattcggtt
aagtatttaatagagacccgccaggcgtcagtttctctcttttttgccttcgagtacatg
attttggcaacatcaacagtatcaacatttgtaaaatatgtattctatgtcagtgacatg
cttatggaaggacagtgggaacaaaaagctttctatacattttaccttgaactgattcgg
gacttactgcacttgtctttgtacttgtgtttcttccttgtaattttcatgaactatgga
gtgcctcttcatttgatccgggagctttatgaaactttccgtaactttaaaatccgtttt
gctgattacattcgttaccggaagattgcttctaacatgaatgaccgttttccagatgct
acaccagaagagattgattcgagtgatgcaacctgcatcatctgtcgcgaggagatgaca
acagccaagaaattaatttgtggccatctctttcatgttcactgccttcggtcttggtta
gagaggcaacacacttgtcctacttgccgagcccttgttgtgccatccgaaaatggggca
agtacagctggttcccatgctaatgttcaccaacaaggaacaaacatgtcaaatacacct
tctcagggctcaaacggtgatggtgcagcaaatgctaatatcagcccgcaacaggccaga
ctacgggccgctgctgcggctgctgcggtatatgaaaaatcttatgtatacccatctcca
agtacactaatctggtcccctggatacgctttacctctgcaaacagacagatctgaggct
ggctctagcattgggaatcctagcggagaaacttcttctggacccaacacactgaaacct
caatttgcaaccgtgggtggacctgcagaattctctttccctcagtttccaaagcccacc
cccagttcctctcaggcttttgatattgatgcgaaatttgaacagcattttggtagcaat
agatatatatcagactctcaattggaagagcaaagaaaactaattcaacggcaaattgag
gttctgcaagaacaactacaacttctacaaaagccaaatgctgacagaagtgcagaaatg
gatcaaacagcaactgctaataaaaagggaaaggggcttgcatcatcatcatcttcttcc
tcgtctaattcagatagggaagactga
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