Apium graveolens (celery): 141690051
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Entry
141690051 CDS
T11340
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141690051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141690051
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141690051
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141690051
mRNA degradation factors
3'-5' decay
Ski complex
141690051
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
DUF1922
AAA_22
Motif
Other DBs
NCBI-GeneID:
141690051
NCBI-ProteinID:
XP_074350736
LinkDB
All DBs
Position
10:103077776..103098712
Genome browser
AA seq
1357 aa
AA seq
DB search
MNRIDVVNELPFRVGFTGHSGHLRIEPLPPVQSSDPLNSLPDFILPPAFPTETPDSIKEY
IEEKYLLPRLDEDDFSPDKDGRQWEFDWFDKAKVNLEPSLPRSVVVPTWELPFRRSSMST
MPNNWDPSSVQVDVAELMVGSVDSGALPRISGPAKDFVRGSINSRPFRPGGLNDSQTIGR
ILPDGATSGDWVQEVLTGGASQSHPPSFKQGMDFGNLKAHLHLWNVHRDQGEPESTSDAK
TQLSVQFDDLFKRAWEEDVIESARNGESNDNVEDESSVDVEDLNKPDSYLPETEKSTSNV
SGSGSVVETSVLDEILSVESGSSTSGLIEGSGTSEQQQKEAWAVSGGSESIAAHFHDLIP
DKALDFPFELDAFQKEAIYYLEKGDSVFVAAHTSAGKTAVAEYAFALASKHCTRAVYTAP
IKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIF
DEVHYVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKQIRVTGTTR
RPVPLEHCIFYNGEFFKVCENEKFLSPGYKAAKDAYKKKSTSTVGGSGKYTSGPSVSHDV
ARTQKRESSIRGKQNKHSGPQNLGGWGHQNNGGHQNNWGSRRSEASLWLLLINKLTKLSL
LPVVIFCFSKNRCDKSADHMNGVDLTSSSEKSDIRIFCDKAFSRLKGSDRNLPQVVRLQN
LLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKILFSTETFAMGVNAPARTVVFDTLRKFDG
KEFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIPEEKDMKNVIIGSATRLESQFRL
TYIMIMHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKAIECIKGEPAI
EEYYELYSEAQKYNTEISEAVMKSPVSQQYLVPGRVVVVKSQSVQDHLLGVIVKAPSLNS
KQYIVLVITPDLPLTLQAPLNSGDQHKNSGDFQILVPKAKRGLEDDYFSSVSSRKGSGVI
NIKLPHRGNAAGVNYEVRGIEGTEFLCICNCKLKIDQVRLLEDVSSAAYSKTVQQLLEKK
SDGRYPPALDPIKELKLNDMNVVEAYYKWCALLQKMTQNKCHGCVKLEEHIKLAKEVKKH
KEEVKALKFEMSDEALQQMPDFQGRIDVLKEIGCIDSFLVVQIKGRVACEMNSGEELIST
ECLFENQLDDLEPEEAVAIMSAFVFQQRNASEPSLTPKLSEAKKRLYNTAIRLGELQAQF
KLQIDPQEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFR
NAAAIMGNSALHKKMEIASNAIKRDIVFAASLYITGV
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgaatcgatgttgtaaatgagcttccttttcgggtcgggttcaccggacacagc
ggtcatctcagaatcgagcctcttcctcctgttcaaagctccgatccgctcaattcgctt
cctgactttatacttcctcctgcatttcctacagagacgccagactcaataaaagaatat
attgaagagaaatatctcctgccaagattagatgaagacgacttttctcctgacaaagat
ggaagacaatgggagtttgactggttcgataaagcaaaagttaacttggagccatcatta
cctcgatcggtcgtggttccaacatgggagttaccttttagacgttcaagtatgagcact
atgccaaacaactgggatcccagctcagtacaggttgatgtagccgaacttatggtaggg
tccgtggattctggtgcattgccacgcatttctggacctgcaaaggactttgttcgtgga
agcattaacagccgtccttttcgtcctggtggtttaaatgattctcaaaccattggaagg
attcttcctgatggtgcaaccagtggggattgggtgcaggaggtgcttactgggggtgcc
tctcagtcccatccaccgagttttaaacagggaatggatttcggtaacctcaaggcacat
ttacacttatggaatgttcatcgggatcaaggtgaaccggagagtacatctgatgctaag
actcagttgtctgtgcaatttgatgacttatttaagagagcatgggaagaggatgttatt
gaatctgccagaaatggtgaatctaatgacaatgttgaggatgaatctagtgttgatgtt
gaggatcttaataagccggattcttatctaccggaaactgaaaagagtacgtcgaatgta
agcgggagtggttctgtggtggagacatcagttttggatgagattttgtcagttgaatcg
ggaagttcaacttcaggattaattgaaggtagtggcaccagtgaacagcaacaaaaagag
gcctgggcagttagtggaggaagtgaaagtattgcggcgcacttccatgatctcattcct
gacaaggcgcttgattttccatttgaactggatgcttttcagaaagaggctatttattac
cttgaaaagggagactctgtttttgtggcagctcatacatccgctgggaagacagctgtt
gcagagtatgcatttgccctggcttcaaaacattgtaccagagcagtatatactgctcct
ataaaaacaatcagcaaccaaaagtatagggatttttgtggaaaattcgatgttggcctt
ttaaccggggatgttagcttgaggcctgaggcttcatgtctcatcatgacgacggaaatt
ttaagatcaatgctttacaagggtgctgatatcatacgtgacattgaatgggttatattt
gatgaagtgcattatgtcaatgatgttgaaagaggtgtagtttgggaagaagttattata
atgcttccaaggcatatcaacatcgtcctcctttccgcaacggtaccgaatacaattgaa
tttgctgattggattggtcgcacaaagcaaaaacaaatacgtgtgactgggacaaccaga
agaccagttccattagaacactgtatattttacaatggggagtttttcaaagtttgtgag
aatgaaaagtttctttccccgggatataaagctgccaaagatgcatacaaaaagaaaagc
acgagcactgttggtggttctggaaaatatacttctggaccttcagtatcccatgatgtt
gctcgaactcaaaaacgggaaagttctattagaggcaaacagaataaacattctggaccc
caaaatcttgggggatgggggcaccaaaacaatgggggtcaccagaacaactgggggtca
aggagatcagaagcttctttgtggttgttgcttattaataaactcacaaagttgtcactg
ttacctgtggttatattctgtttttcaaaaaatcgttgtgataaatcagctgatcatatg
aatggggttgacctcacaagtagttctgaaaaaagtgacattcgcattttttgtgacaaa
gcattttcacgactgaaaggatctgacaggaacttaccccaggttgttagactccaaaac
cttctacgtcgaggcattggtgtgcatcatgcaggactacttccaattgttaaggaggta
gttgaaatgcttttctgccgtggtgtcattaagattttattttcaacagaaacatttgcg
atgggtgtaaatgcgccggctaggacggttgtgtttgacacattacggaaatttgatgga
aaggaatttagacaattactcccaggagaatatactcagatggctggccgtgctggaagg
aggggactggataagattggtacagtggttgtgatgtgtcgtgatgaaatccctgaagag
aaggatatgaagaatgtcataattggtagtgcaacgaggcttgaatctcaatttcgattg
acctacatcatgattatgcatctccttcgtgttgaagaattaaaggtcgaggacatgcta
aaaagaagttttgctgagtttcatgctcagaaaaagcttccagagcagcaacaactttta
atgcgaaaacttgctcagccaacaaaagccatcgaatgtataaaaggtgaaccggctatt
gaggaatattatgaattgtactctgaggctcagaaatataacactgaaatatcagaggca
gttatgaagtccccagtttctcaacagtatcttgttcctggaagagttgtggtggtgaag
tcacaatccgtacaagatcacttacttggagtcatagtaaaagcaccttctttgaacagc
aaacagtacatagttctagttatcacacctgatttacccctgacattacaagctcctctt
aatagtggcgatcaacataaaaacagtggtgattttcagatattggtacctaaagcaaaa
cggggacttgaagacgactacttttcgtctgtctcttctcgaaaaggatcaggtgtgatc
aacataaaattaccacaccgtggcaacgctgctggggtgaattatgaggttcgaggaatc
gagggaacagaatttttatgtatatgtaattgcaaattaaaaattgaccaagttcggcta
ttggaagatgttagtagtgcggcttattccaagaccgtacaacaactcttggagaagaaa
tctgatggaagatatcctcctgcactagacccaattaaagaattaaagctaaatgatatg
aatgttgtggaggcatactacaagtggtgtgccctactgcaaaagatgacacaaaataag
tgtcacgggtgtgttaagttggaggagcacattaagttagcaaaagaggtgaagaagcat
aaagaggaagttaaagctctaaagtttgaaatgtcagatgaagcacttcagcagatgcca
gattttcaaggacggattgatgttctgaaggaaattggatgtatagattctttcctcgtc
gttcagataaaaggccgtgttgcttgtgaaatgaattctggggaggagctgatatccacc
gaatgcttgtttgagaaccagctagatgatctagaaccagaagaagcggtggcaataatg
tcagcctttgtgtttcagcagaggaatgcttcagaaccttctctcactcctaagctctca
gaggccaaaaagagattgtacaacacggctataagactgggggagcttcaagcacagttc
aagctgcagatagatccccaggagtatgctcgagagaatcttaagtttggccttgttgaa
gtagtgtacgaatgggcaaagggaaccccatttgctgatatctgtgaacttacggatgtt
cctgaaggcctgatagtgaggaccatagttaggttggatgagacatgccgtgaatttaga
aatgctgctgcaattatgggtaattctgcacttcacaaaaagatggaaattgcttccaat
gcaataaaacgtgatattgtttttgctgctagtttgtacattacgggagtgtga
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