Apium graveolens (celery): 141690104
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Entry
141690104 CDS
T11340
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141690104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141690104
03009 Ribosome biogenesis [BR:
agrv03009
]
141690104
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141690104
Spliceosome [BR:
agrv03041
]
Complex A
U2 snRNP components
U2 related factors
141690104
Complex B
141690104
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
141690104
Ribosome biogenesis [BR:
agrv03009
]
Eukaryotic type
90S particles
Helicases
141690104
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
AAA_22
AAA_19
DEAD
nSTAND3
nSTAND_NTPase5
SLFN-g3_helicase
AAA_30
FtsK_SpoIIIE
ATPase
Motif
Other DBs
NCBI-GeneID:
141690104
NCBI-ProteinID:
XP_074350844
LinkDB
All DBs
Position
10
Genome browser
AA seq
697 aa
AA seq
DB search
MNDHHLRAGGITETPSFNPWNGRPYSQKYYDLLEKRKKLPVWRYRDEFVKELMSNRVVIV
AGAVGSGKSTQIPQFVLEAVALENEYIISCTQPRKVKTVSVSHRVADEMDVNIGEEVGYS
VCFEDCSSSLTVLKYLTDGMLLREAMTDPLLKKYKVIILDEAQERTLATDVLFGHLRELL
EKRIDLKIVVMTAIFEAAKFQDYFYGASLMTVPGPHCVEIYYTRDPERNYFEAAIRTVLQ
IHSTEPPGDILLFLTSKEEVEEACSKLTREIGTLVDHVGPLKVVPLNSTLPPLMQQKVYE
PSPPPLTENGLAGRKIVLATNNTVNSVIKDGIVYVIDPGFSKQKVYDPLVRVESLFVSPI
SKSSTHQRAGFAGIAHPGKCFRLYTERSFHDDLQPHTYPKILRSNLTKTVLTLIKLGIDK
LGHYDFMDVPAPMSFIRGLEVLNYIGALDDNGALTKLGEIISEFPLDPEMAKMLVMSPKF
NCSNEILSISAMLSVPNCFVRPREAQNAADDAKARFRHIDGDHLTLLNVYRAYKQNNEDE
SWCNENFVNHWALKSADNVRQQLARIMAMFHLKLSSTDFNSPDYAVNLRRAILSGYFMQV
AHLDSTGIYRTVKDNQVVYLHPSNSLDHKPEWVLYDRHVLTSRNFIRTVTEVHGEWLVDT
APDYYDLQYIPQSSAKCALEVLYTSRELGRCCIQDES
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatcatcacctccgcgccggaggaatcactgaaacgccgtcgtttaacccttgg
aacggccgtccgtacagtcagaaatactatgatttgttggagaagaggaagaaactgcct
gtttggcgatacagagacgagtttgttaaggagctgatgagtaatcgagtcgtgattgtt
gctggagcagtcggttctggtaaatccactcagatccctcaatttgttctggaagctgtt
gccctcgaaaatgaatacataatttcctgcacacagcctagaaaggtgaaaacagtttct
gtttctcatagagttgctgatgagatggatgtgaatattggagaagaagtaggatatagc
gtctgttttgaagactgcagtagctcgctgactgttcttaagtatttgacagatggtatg
cttttaagagaggcgatgacagatccacttctaaaaaaatacaaagttataattctcgat
gaagctcaggagaggactttggcaacagatgttttatttggacacttgagggagttgctg
gaaaaaagaattgatctaaagatagtggttatgactgctatttttgaggctgcaaagttt
caagattatttctatggtgcatctctcatgacagttccaggaccccactgtgtggaaatt
tattatacacgggatcctgaaagaaactattttgaagcggcaattcgtacagttctgcag
atacacagcactgagccccctggtgatatacttctctttcttactagtaaggaagaagtt
gaagaggcatgttctaaactaaccagagaaataggtactttagttgatcatgttgggcca
ctaaaagttgttcctctcaattccacacttcctccactaatgcagcagaaagtatatgaa
ccttccccacctccattgacagaaaatggtctcgctggaaggaagattgttcttgccaca
aataatacagtaaattcggtgatcaaggatggaatagtgtatgtaatagaccctggtttt
tccaaacaaaaagtttatgacccactagtccgtgtagaatctttgtttgtttccccaata
tccaaatccagcacccaccagagggcagggttcgccggtatagcacatccaggaaagtgt
ttccggctttacacagagagaagctttcacgatgatcttcagcctcacacatacccaaaa
attcttaggtcaaacctcacaaagacagtcctaactctgataaagttaggtattgataag
ttaggccattatgattttatggatgtccctgctccaatgtcatttatcagagggttggag
gttttgaattatattggagctttagatgataatggtgctttgaccaagctgggagagatt
attagtgaattcccactagatccagagatggcgaagatgcttgtaatgagccctaagttc
aactgttcgaatgaaattctttctatatcagctatgctctcagtgcccaattgctttgtc
cggcctagggaagctcagaatgctgcagatgacgcaaaagctcggtttcggcacattgat
ggggatcaccttacactcttaaatgtataccgagcatacaagcaaaataatgaagatgag
tcttggtgtaatgaaaactttgtcaaccattgggcacttaaatctgcagataatgtcaga
caacagcttgctcgcatcatggctatgttccacctcaagctctctagcacagactttaac
agtcctgattatgctgtcaacctcagaagagccattttaagtggatatttcatgcaggta
gctcacctggacagtactggaatctacagaactgtgaaagacaaccaggttgtttacctg
cacccatcaaattcccttgatcacaagccggagtgggtactatatgataggcatgtctta
acaagcagaaatttcatacgcacagtaactgaagttcatggtgaatggttggttgatact
gctccagactactatgatcttcagtacattccccagtctagcgctaagtgtgctttggaa
gtgctgtatacgagccgagagctagggaggtgctgtatacaagatgagagctag
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