Apium graveolens (celery): 141690309
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Entry
141690309 CDS
T11340
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
agrv Apium graveolens (celery)
Pathway
agrv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
141690309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agrv03021
]
141690309
03036 Chromosome and associated proteins [BR:
agrv03036
]
141690309
Transcription machinery [BR:
agrv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
141690309
Coactivators
SAGA/TFTC/STAGA complex
141690309
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
141690309
STAGA complex
141690309
TFTC complex
141690309
SAGA complex
141690309
SLIK complex
141690309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
ANAPC4_WD40
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_Vps41
Beta-prop_SPT8
Tricorn_2nd
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Cytochrom_D1
PALB2_WD40
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
141690309
NCBI-ProteinID:
XP_074351141
LinkDB
All DBs
Position
10:158380705..158396450
Genome browser
AA seq
663 aa
AA seq
DB search
MDEEEIEKVVLAYLKKKGLKQTELALQEEQQAKNNADPDAAKQVVSFSEPDNIPEQYEDG
YCKLRSWTYSSLDLYKHELLRILYPVFVHCFMDLVAKGHLQEARAFFNKFREDHEMMHLR
DLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYDLMMQYLHKTQSITMLGIINEHI
NFQVSPGQPISLSDDTEVVTLVGSGQDTANLINQKEIHWGLLEDSVEERLEKTLLSDPEK
AEGETKEGESEENKKRSMEGGKQGTSSKKLKKDKVVGAAAKAARTEGSVSAAPRVKSELS
LPVIPTEVEYSILDDLRNRVQLSNVALPSVSFYTFLNSHNGLNCSSISHDGSLVAGGFSD
SSLKVWDMALLGQQTESSILPEENEAARSVPGTNSGKRSYSLYRGHSGPIYSAAFSPFGD
FLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPAGHYFASSSHDRTARIWSMDR
IQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLA
MSPDGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWTLDYSCEGSLLASGSADCTVK
LWDVTSSTRVPKAEEIKTGSTTNRLRSLKTLPTKSTPVYAVKFSRRNLLFAAGPISAKGL
ATY
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaggaaattgagaaagtcgtgttagcttacctgaagaagaaggggttgaag
cagaccgagcttgcgcttcaagaagaacaacaagctaaaaacaatgctgatcctgatgct
gccaaacaagttgtttctttctcagagccagacaatattcctgaacaatatgaagatgga
tactgcaagctaaggtcatggacttacagttctctggatttgtataagcatgaattgctc
cgtatcttgtatccggtctttgtccactgctttatggatcttgtggcaaaaggtcatctt
caagaagctcgggccttctttaacaaattccgtgaagaccatgaaatgatgcatttacgt
gacctccaaaagttggaaggcgttctgtcaccttctcatctggaggagatggaatttgct
cattctctgaggcagagtaaagtgaatataaagatatgtcagtattcttacgatctaatg
atgcaatatctacacaagacacaatctattacgatgcttgggattataaatgaacatatc
aacttccaagtttctcctggacaacccatctcactttctgatgatactgaagttgttacg
ctagtgggcagtggtcaagacactgctaatctaataaatcagaaagaaatacattgggga
ttgcttgaagattctgtagaagaacgattggaaaagactctgctttcagatccagaaaag
gcagaaggagaaacgaaagaaggggaatcagaagagaataagaaaaggtcaatggaggga
ggaaagcaaggcacatcttctaaaaaattgaaaaaagacaaagttgttggtgctgccgca
aaagctgccaggactgagggaagtgtatctgcagccccgcgtgtcaaatcagagctttct
ttgccagtaataccaacagaggtggaatattcgattcttgatgaccttagaaaccgtgta
cagttgagcaatgtagctttgccgtcagtcagtttctatacatttctcaactctcataat
gggttgaactgttcttcaatatcacatgacggatcattggttgcaggtggattttctgat
tcatcgctgaaggtatgggacatggcacttcttgggcagcagactgaaagttctattttg
ccggaggaaaatgaggcagctcgtagtgtgcctggaacaaattcggggaaaagatcgtat
tcattatatcgcggtcattctggtcctatatattctgccgcgtttagtccttttggggat
tttcttctgtcatcttcatcagattcaacaattcggttgtggagcaccaagttgaatgca
aatcttgtttgctacaaaggtcataattaccctgtatgggatgttcaatttagtccagca
ggacattattttgccagttcctcgcacgatcgaactgcaagaatttggtcaatggacaga
atacagcctctcagaatcatggcagggcacttatctgatgttgattgtgttcaatggcat
gctaattgcaactacattgcaactggatcaagcgacaagactgttcgcttatgggatgta
cagagcggagagtgtgtgagaattttcatcggtcataggagtatgatcttatctttggca
atgtcacctgatggtcgatacatggcatctggagatgaagatggaaccattatgatgtgg
gatttgtctagcggccgttgtgttactcctttggtcggtcatacttcttgtgtatggaca
cttgattacagttgtgagggttcacttcttgcatccggttctgctgattgcactgtaaaa
ctgtgggatgtgacgtcaagtacaagggtgccaaaagcagaagagatcaaaactggaagt
actacaaacaggcttagatccctcaagaccctacctacgaaatctacaccagtctatgca
gtaaagttttctcggagaaatcttctcttcgctgctggaccgatctctgcaaagggctta
gcaacttattga
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