KEGG   Apium graveolens (celery): 141692300
Entry
141692300         CDS       T11340                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03082  ATP-dependent chromatin remodeling
agrv03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    141692300
   03083 Polycomb repressive complex
    141692300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:agrv03036]
    141692300
Enzymes [BR:agrv01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     141692300
Chromosome and associated proteins [BR:agrv03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     141692300
   HDAC complexes
    Sin3A-HDAC complex
     141692300
    BRAF-HDAC complex
     141692300
    REST complex
     141692300
    SHIP complex
     141692300
    MiDAC complex
     141692300
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     141692300
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    141692300
  Chromatin remodeling factors
   NuRD complex
    141692300
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 141692300
NCBI-ProteinID: XP_074353163
LinkDB
Position
10:complement(37678814..37687429)
AA seq 419 aa
MARKDEFSGASLPSPGTDATKRKVTYFFEPRIGDYFYGDHPMKPYRIVMAHDLIVHYNLH
RKMEIMRPFPAQASDIQKFHSPDYINFLASVTPEIVDDQAHSEVVKRYKVGRDCPVFDGL
FSFCQASAGGSIGAAVKLNRQDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKI
HRRVLYIDIDVHHGDGVEEAFYTTNRVMTVSFHKYGEGFFPESGKIEHNGHGEGKHYALN
VPLDNGIDDESFQNLFQPIIQKVMEAYQPEVVVLQCGADSLSGDKLGCFNLSMKGHADCL
RFVRSFNVPLMVLGGGGYTIRNVARCWCYETGVAVGEELDNKLPYNEHYNYFGPDYTLHY
QTKPMANKNTPSGLEKIRNQCLEQVSRLPNAPSVQFQAAPPVIQVPEEDEEDMDRSANT
NT seq 1260 nt   +upstreamnt  +downstreamnt
atggcgaggaaagacgagttctctggcgcttccctcccttcaccgggcacagatgcaaca
aaacgtaaggtcacatacttcttcgagcccagaatcggtgactacttctatggcgaccac
ccgatgaaaccttacagaatcgtgatggcccacgatctcatcgtccactacaatctccac
cgaaaaatggaaatcatgcgtccttttccagcacaagcaagcgacattcaaaaatttcat
tccccagattacataaactttcttgcttctgttacacctgaaatagtagatgatcaagca
cattcagaagttgtgaagagatacaaagttggtagagattgtcctgtttttgatgggttg
tttagtttttgtcaggcttctgctggtgggtctatcggtgctgctgtgaaattgaatagg
caagatgctgacattgctatcaattgggctggtgggttgcatcatgctaagaaatctgag
gcttctggattttgttatgttaatgatattgtgcttgggattcttgaactactcaaaatc
cacaggcgtgtgctttatattgatatcgacgtacaccatggagatggcgtagaagaagcc
ttctataccacaaatagggttatgactgtgtcgtttcataaatatggggagggcttcttc
cctgaaagtgggaaaattgagcacaatggacacggtgagggaaaacattatgctctcaat
gtgccactggacaatggtatcgatgatgagagtttccaaaatctttttcaaccaattatc
cagaaagtcatggaggcttaccaaccagaggttgttgttcttcagtgcggagcagattcg
ttatctggtgacaagctaggatgcttcaacctgtctatgaaaggtcatgctgattgcctc
aggtttgtgagatctttcaatgttcctctgatggttctgggtggaggagggtacactatc
cggaatgtggcccgatgctggtgctatgagacaggggttgcagttggcgaagaacttgac
aataaattgccttataacgaacactacaattacttcggtccagactatactcttcattac
cagacaaaacccatggcaaacaaaaatacaccttctggtttagagaaaatcagaaatcaa
tgtctggaacaagtttctagattgccaaatgcacccagtgtccagttccaggctgcaccg
cctgttatccaagttccagaagaggatgaagaggatatggacaggtcagctaatacatga

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