KEGG   Apium graveolens (celery): 141693027
Entry
141693027         CDS       T11340                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
agrv  Apium graveolens (celery)
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:agrv03009]
    141693027
Ribosome biogenesis [BR:agrv03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    141693027
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_EML NBCH_WD40 Beta-prop_TEP1_2nd Beta-prop_TEP1_C EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd Beta-prop_IP5PC_F Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_VPS8 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_WDR75_1st WDR54 Beta-prop_WDR75_2nd Beta-prop_SPT8 Beta-prop_BBS7 Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 141693027
NCBI-ProteinID: XP_074354110
LinkDB
Position
10:173851302..173857451
AA seq 449 aa
MEDEIVIASSPTDAGISCFDLHSGAEHLRYRNCASPPHSLISVGGRYLAASQVRDAAANS
GSVFYWSWNKPQVEVKCFPSEPINTLVCDDDGSFIIGGGVSGDIYIWQVATGRLLKKWHA
HYRAVSCLVYVDQSTLISGAEDGCVRVWSLLMIFDNIRRNEAKHLFEYSFSEHSLRVTDI
VIGNGGCNAIIISASEDRTCKVWSLSKGKLLRNIVFPSIIDAIALDPGEHVFYAGGRDGK
IYIAALHAQPTSTSNYGPHIIGTLSDHSKAVTCLAFAVNGHLLVSGSEDGMIRVWDTRSR
NIIRILKHAKGPVNNLLVIRRPPSLYPRTSMHSQSLSVRRQGALVPPPLEKYTNSTDDNS
DVKAVIIPRVDSEIPFYASYISTCTMTNQIKELEQQGSSGAMEMEIERLKLDYKRSTQML
QQWKKMYENLNQFCVNELLDGDQSRGPAT
NT seq 1350 nt   +upstreamnt  +downstreamnt
atggaagatgaaattgtgattgcgtcgtcgccgaccgacgctggaataagttgctttgac
ttacactccggtgccgaacatctacgctacagaaattgcgcctcgccgccgcacagtctc
atctccgtcggcggccgctatctcgccgcctctcaagttcgtgacgccgctgctaactct
ggctctgttttctattggtcttggaacaagcctcaggttgaagtcaagtgttttccttcg
gaaccgataaatacactggtttgtgatgatgatggaagttttataattggaggcggcgtc
tctggagatatttacatatggcaggtcgctaccggtagattgctaaagaaatggcacgct
cactacagggctgtttcatgtttagtatatgtagatcaatctactttgatttctggggca
gaggatgggtgtgttcgagtctggtcacttctcatgatttttgataatatccggaggaat
gaagcaaaacatctatttgaatacagtttctccgagcactctctacgagtgaccgatata
gttattggtaatgggggatgtaatgcaataataatttctgcttccgaggatcggacttgc
aaggtatggagcttatccaagggaaaacttctgagaaatattgtgttcccatcaataatt
gatgcaattgcgttggacccgggggagcatgtattttatgccggaggtagagatggaaag
atttatattgctgcccttcatgctcaacctacatctaccagcaattatggtccacatatc
attggcacattatctgatcacagcaaggctgttacttgcttggcttttgctgtcaatggg
catcttttggtttctgggtcagaggatggcatgatacgagtctgggacactagatcccgt
aatatcattcgtatccttaaacatgcaaaaggtcctgtgaacaatttactcgtaataaga
cgacctccgtctttgtatcctcgaacatcaatgcattctcagtctctgtctgtgagaaga
cagggtgccttggtgcctccaccactggaaaagtatacaaattcaacggatgacaattca
gatgttaaggctgtcatcattccccgtgttgattcagaaattccattttatgcttcgtac
atcagcacctgcacaatgactaaccaaatcaaagaacttgagcaacaaggttcttctgga
gctatggaaatggagattgaacgactaaagcttgactacaagcgatctacgcagatgcta
caacaatggaagaaaatgtacgagaacttgaatcaattttgtgtcaacgagctcctggat
ggagatcagtccagaggacctgccacatga

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