Apium graveolens (celery): 141693534
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Entry
141693534 CDS
T11340
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
agrv Apium graveolens (celery)
Pathway
agrv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141693534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agrv03021
]
141693534
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141693534
Transcription machinery [BR:
agrv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141693534
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
141693534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
141693534
NCBI-ProteinID:
XP_074354773
LinkDB
All DBs
Position
10:211493848..211502370
Genome browser
AA seq
1030 aa
AA seq
DB search
MEMENSRRSYDRSRDIGLKRPRLDEQVVNRGRAFAQSQPESRGRGDLEGSGNDTSIQELA
SQYRTALAELTFNSKPIITNLTIIAGESLHAAKAIASIICSNILEVPTEQKLPSLYLLDS
IVKNIGRDYIKYFASRLPEVFCKAYRQVDPAVHPGMRHLFGTWRNVFPPQSLQIIEKELG
LPPAVSSSASGASKPGSQSQRPAQSIHVNPKYLEARQNQQSSKVKETITNVNGSRGSSPA
DVEKSLRTSSLNVARRADPRLKMHNIQHPPKDVGTGSFQQNSLEFGAYDYNTELARHSAS
GIKKTSDRISEQVVDRSWYGSGSSIAETTSSRINSSNVKLGNTNYLGSESASRDPNLQKA
RNLVSGRSSIEIDRSWKNSEEEEYTWDDVNSRSTSYGVNRKSKRDPRLMDDSERLDTQST
ILKPQILHEIGLSVDKEASSAALLSEQRNQIALGTRASTGPRASLGLSYSGFSQTSSGYS
AASLSGLSTNSNSMVRTSFPVPGSPGSAVQQRYSVEAASPSGQSPMHQHPSSPYLSKHQT
SEEPLQALPHADIELHRRFPQNLPMSAKTVTRNDHRGSTQNLQTSNSQGSPYINLSQQRH
QNPFLQNDSIQYDPYAPSSKPLVPQISMEENPLTVVKSSSGSSSHLAQQMLGQLNASHLL
TAVMDSGILGKNSGIGNMPKNSSQNAISLPSQTSSRPSLPSGISPTQSEVKVASATNARP
LSHESTIITSIQRQTECPPLPRGPPPSSTVSSGSEQTATAENATSNPMSSLLNTLMAKGL
ISASKKESTAPPQAVADPCNQIPGIVTTPKVGSTFPVSSAIAPSSTCEKLSESKPITKSP
VSLDASSINDIKSHIGFEFKPDVIRVPHPSVVDELLHDLPHKCSICGLQVKLKESFDRHM
EWHTLKNADSGSRRWYVSSLDWIQEKVSTDEVTDVKGASDKELESGGLLMVPADENHCVC
VLCGELFEDYYSQKIDRWMFKEAVYLTLSAQSVITSFTGEKGPIVHANCISESSLHDLGL
ANDVKVESDA
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagaattctcgtagatcatatgatagatcgagagatataggcttgaaaaga
cctagattagatgaacaagttgttaatcgtggccgtgctttcgctcaatcgcagccggaa
tcgagaggtagaggtgatctggaaggtagtggtaatgatacatcgattcaggagttagct
agtcagtaccggactgcacttgcggagctcacgtttaattcgaagccgattattactaat
ttgactattattgcgggagaaagtttgcacgccgccaaggctattgcttcgattatctgc
tcaaacattctcgaggttccaactgagcagaaactcccatctctatatctgttagacagt
attgtgaagaacattgggagggattacataaagtactttgcttccagactcccagaggtc
ttctgcaaggcatataggcaagttgatccagcagtacaccctggcatgcggcatctattt
ggaacctggagaaatgtatttcctcctcaatcgcttcagattatagaaaaagaacttggg
cttccgcctgctgtcagcagttcagcatcaggagcgtctaagccgggttcacagtctcag
cgaccagctcaaagtatacatgtaaatcccaagtatttagaggcaaggcagaatcaacag
tcaagcaaggtgaaagaaacaatcacaaacgtaaatgggagccgtggaagctctcctgct
gatgtggaaaaatctctgaggacaagcagccttaatgttgcaagacgagctgatcctcgt
cttaagatgcataatattcagcatcctccaaaagatgtcggaactggatcttttcagcaa
aacagtttggaatttggtgcatatgattataacactgagcttgcaaggcactcagcttcg
ggtatcaaaaagaccagtgataggatctcagaacaagtagttgataggtcttggtatgga
tctggcagcagtattgctgagacaacatccagccgaataaatagttctaatgtcaagctt
gggaatacaaattatttaggctctgaatctgcaagcagggacccaaacttgcagaaggca
cgcaaccttgtcagtggtagaagcagcattgagattgatcggagttggaagaactctgaa
gaagaggagtacacgtgggatgatgtaaattctagatcaacaagttatggcgtcaatcgg
aagtcaaagagagatcctaggttgatggatgattctgagagactggatactcagagcact
attttgaagcctcaaattctacatgaaattgggttaagtgttgacaaagaagcttccagt
gctgcattgctgtctgaacaaaggaaccaaattgctcttggaactcgtgcttcaactggg
ccgcgggcaagcctcgggttaagctattccggtttcagtcaaactagttcagggtattca
gctgcctccttgagtgggttgtcaacaaattcaaattccatggtcaggacgtctttcccg
gtaccggggtcccctggatctgcagtacaacaaagatactctgtagaggctgcatcacca
tctggacaatcgccaatgcaccagcatccttcctcgccttacctctccaaacatcaaacc
agtgaagaacctttacaagcactgcctcatgctgacatcgaactgcataggcggttccct
cagaatttgcctatgtctgctaagacagtaacccggaacgatcatcgagggagcactcag
aacttgcaaacctcaaattcacagggctctccatacataaacttgtctcagcaaaggcat
caaaatccatttttgcaaaatgattccatacaatatgatccttatgctccatccagcaaa
ccattagtaccccagatttcaatggaggaaaaccctttaacagtagtgaagtcttcatct
ggttcttccagtcatcttgctcagcaaatgctaggacaattgaatgcgagtcatttattg
actgctgttatggatagtggaatacttggtaaaaattctggcattggcaacatgcccaaa
aatagcagtcagaatgctatttcattgccttcacaaacatcgtcacggccttctctaccc
agtggcatttctccaacgcaatcagaggtcaaagttgcttcagcaactaatgcaaggcca
ttatcccatgaaagcacgattattacctcaatccaaagacagacagaatgtcccccgctg
ccacgcggacctccgccctcttcaaccgtaagtagtggctcggaacagactgcaaccgcg
gaaaacgccacatctaatccaatgtcaagcctcttaaatacattaatggcgaagggcttg
atttctgcatcaaaaaaagaatcaactgctccacctcaggctgttgctgatccctgtaat
cagattccaggaatcgtgactactcctaaggtaggttccactttcccagtttcgtcagct
attgcaccctcatccacttgtgaaaaactttctgagtctaagcccattaccaaaagccct
gttagcttggatgcatctagcattaatgacattaaaagtcatatcggttttgagtttaaa
ccagatgtaattcgggtgcctcatccttcggtagttgatgagctccttcatgatcttcca
cacaagtgcagtatttgtggtcttcaagtcaaacttaaagaaagttttgatagacatatg
gagtggcacacacttaaaaatgctgattcaggtagtcggagatggtatgtcagttctctt
gattggattcaagaaaaggtttctactgatgaagtcactgacgtgaagggggcttctgat
aaagaattggagagtggtggtttattgatggttcctgctgatgaaaaccattgcgtatgt
gtgttatgtggggagctgtttgaagattattacagtcaaaaaatagatcgatggatgttc
aaagaagctgtttacttgactctttcagctcaaagtgtgataacaagttttactggagaa
aagggtcctattgtccatgctaactgtatatcagagagttctcttcatgatttgggtcta
gctaatgatgtaaaagtggaaagtgatgcataa
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integrated database retrieval system
