Apium graveolens (celery): 141696999
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Entry
141696999 CDS
T11340
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03008
Ribosome biogenesis in eukaryotes
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141696999
09123 Folding, sorting and degradation
03018 RNA degradation
141696999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agrv03021
]
141696999
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141696999
03009 Ribosome biogenesis [BR:
agrv03009
]
141696999
03016 Transfer RNA biogenesis [BR:
agrv03016
]
141696999
Transcription machinery [BR:
agrv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141696999
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
141696999
Ribosome biogenesis [BR:
agrv03009
]
Eukaryotic type
Pre-60S particles
RNases
141696999
Transfer RNA biogenesis [BR:
agrv03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
141696999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
141696999
NCBI-ProteinID:
XP_074357276
LinkDB
All DBs
Position
11:53635489..53659685
Genome browser
AA seq
964 aa
AA seq
DB search
MGVPAFYRWLANKYPMTIVDVIEEEPVHISGVDFPVDTSKPNPNGLEYDNLYLDMNNIIH
PCFHPEDGPSPSTFNEVFQRIFEYIDRLFSMVRPRNLLYLAIDGVAPRAKMNQQRSRRFR
AAKDAEDAAAEEERLREEFEKQGRMLPQKQKSQVFDSNIITPGTEFMAVLSTALQYYVHL
RLNNDPGWKSIKIILSDANVTGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIMLA
LATHEVHFSILREVLDNPGQKDKCFLCGQVGHFAAECEGKAKRKAGEFDEKGHLVPKKPF
QFLNIWTLREYLEYEIRIPDCRIKIDFERIIDDFIFMCFFVGNDFLPNMPTLDIREGAID
LLLAVYKRKFKFLGGYLTDGCKPDLSRVGRFIETIGGYEDKIFEKRARLHQRQFQRVKRD
IAHVNTERGNDAEPPLKSDMVAVAKFDGSCLISGASPYADMPVHKRPTKAACLSSGSSVG
IATVEGESDLVKEACDNKEELEIKLKSILRERSDAFNCKNPQEDKVKLGEAGWKERYYEK
KFSAKTRKERETIRKNLVLSYTEGLCWVMHYYYKGVCSWQWFYPYHYAPFASDMRDLKEL
NISFELGTPFKPFDQLLGVLPAASAHALPREYRKLMTDPNSPIIDFYPTDFEVDMNGKRF
DWQGIAKLSFIDETRLLAEVAKLEHTLTDEEVKRNSTRADMLFVGLSHPLSPYVSSLQCH
CKQLTMEERNQYRVQLDPGISGGMNGSISLYDGVPCPPIFKSPVEGMDDITNNQVICSIY
RLPDMHEHITHPPVGVKLPQKTVTVGDLKRDPVLWHEDSGNRSQKNDRKLVVMQPSLLQF
PKGAISGQQLVDAARRLVMNSLHLTKDKNGCGDENAQLLPCSTASAVLEFPLQQSNGHVN
ELRRVVPPCKPALPGNSLTDIVVATSPRTKNSPCTARKQLKRKQRKYKKQEQMIKGKESC
GLLK
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcgttttaccgatggttagcaaacaagtatccgatgacgattgtggat
gtaattgaagaagaaccagttcacatctccggtgttgattttccggttgatacaagcaaa
cctaatcctaacggactcgaatacgataatttgtatctcgacatgaataatattatacat
ccttgttttcaccccgaagacggtccttctccgagcaccttcaatgaagtgtttcagcgc
atttttgaatacattgacaggcttttctcgatggtgcgacctcggaatctgctatacttg
gctattgatggtgttgctccaagagctaaaatgaatcagcagcgatctcgacgttttaga
gcagccaaagatgcagaagacgcggcagccgaagaagagaggttgcgcgaggaatttgag
aagcaaggcagaatgcttcctcagaaacagaaatcacaagtttttgattctaatataatc
actccggggactgaatttatggctgttttgtcaactgctttgcagtactatgtccacctt
aggctaaacaatgatccaggatggaaatctattaagattatactttctgatgcaaacgtt
accggtgaaggggagcacaagatcatgtcttatattcgtcttcagcgaaatcttcctggt
tttaatccaaatacacgtcactgcctttatggtttggatgctgatcttatcatgttggct
ttggctacccatgaagttcatttttctatcctccgagaagtgttagacaatccgggacag
aaggacaaatgttttctctgtggtcaagtgggtcattttgcagcagaatgtgaaggtaag
gcaaaaagaaaagcaggagaatttgatgagaaaggtcatcttgtgcctaaaaagcctttc
cagtttcttaacatctggactcttcgggagtacttggaatacgagattaggatccctgat
tgccgtatcaagattgattttgagcgcattattgatgatttcatcttcatgtgtttcttt
gttggcaatgattttttaccgaatatgcctacactggatatacgtgagggggcaatcgat
ctgctcttggccgtatacaagaggaaatttaagtttttagggggttatttgaccgatgga
tgtaagccggaccttagcagggttgggcgttttattgaaactatcggaggatacgaagac
aaaatatttgaaaaacgagctcggctgcatcagaggcaatttcaaagagtcaagcgtgat
atagctcatgttaatacagaaagaggaaatgatgctgaaccaccactcaaatctgacatg
gtagcagttgctaagtttgatggttcttgcctaatctcaggcgcttcaccatacgctgat
atgccagtacataagcgccctacaaaagctgcatgtttatcatcagggtcttcagtaggt
attgctactgttgaaggagagagtgatcttgtcaaagaagcatgtgacaacaaagaagaa
ttggaaataaagttgaagagcattctccgtgaaagatctgatgcttttaactgtaagaat
ccccaggaggacaaggtcaaactaggagaggcaggttggaaagaaaggtactacgaaaaa
aagttttctgcaaaaactcgaaaggaacgtgaaaccatcagaaagaatctcgtattgagt
tataccgaagggctttgctgggttatgcattattactataaaggggtttgttcgtggcag
tggttctatccgtatcattatgcaccatttgcttctgatatgagggatttgaaggagcta
aatataagctttgaactaggtactccattcaaaccctttgatcaactgttgggggttctt
cccgctgccagtgcccatgcacttcctcgggaatatcggaaattaatgactgatccaaac
tctcctattattgatttttatccaactgattttgaggtggatatgaatgggaagcgattt
gattggcagggtattgccaaattaagttttattgatgaaacccgtctgctagcagaggtt
gcaaaacttgagcatactttaacggatgaagaagttaaaagaaacagtacaagggctgac
atgctttttgttggattatcacatcctttatcaccatatgtctcttctcttcagtgtcat
tgcaagcagttgaccatggaagagcgaaatcaatatagagtgcaacttgatcctggaatt
agtggtgggatgaatggttctatctctctttacgatggagttccttgccctcccattttt
aaatctccagttgaaggaatggatgatattacgaataatcaagtgatatgttctatatac
agacttccagacatgcatgaacatataacacatccacctgttggagttaagcttccgcaa
aagactgtcacggttggggacttaaaaagggaccctgttttgtggcatgaagattctgga
aatagatctcagaaaaatgataggaaactagtagtcatgcaaccttcactcttgcaattt
cctaaaggagcaatctctggccagcagcttgttgacgctgcccgtagacttgtaatgaat
agtttacatttaacgaaggataaaaatggctgtggagatgaaaatgcacagttacttcct
tgttctactgcttcagctgtactagaatttcctttgcaacagagtaatgggcacgttaac
gaactccgcagagttgtgccaccatgtaaaccagctcttcctggtaatagcttgaccgac
attgttgtcgctacatctcctcggacaaaaaactctccatgtacagctcgcaagcaattg
aagcggaaacagagaaaatataaaaagcaggagcagatgattaaggggaaggagagttgt
gggttgttgaagtga
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