Apium graveolens (celery): 141697164
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Entry
141697164 CDS
T11340
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03013
Nucleocytoplasmic transport
agrv03015
mRNA surveillance pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141697164
09122 Translation
03013 Nucleocytoplasmic transport
141697164
03015 mRNA surveillance pathway
141697164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141697164
03041 Spliceosome [BR:
agrv03041
]
141697164
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141697164
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141697164
Spliceosome [BR:
agrv03041
]
Complex C
Other components
EJC/TREX
141697164
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141697164
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
141697164
NCBI-ProteinID:
XP_074357515
LinkDB
All DBs
Position
11:complement(175987297..175992675)
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AA seq
428 aa
AA seq
DB search
MGENKDNDAYEEELIDYEEEDEKAPDSVAAKTNGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLA
LARDKELALRNVRHFILDECDKMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKGLPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagaacaaggacaacgacgcgtacgaagaggagcttattgactacgaggaggaa
gatgagaaagctcccgactctgtcgccgccaaaactaacggcgagtccgttaaaaaggga
tatgtaggcattcacagttccggattcagagacttccttttgaagccagaacttctgcga
gctattgtggactccgggttcgagcatccgtctgaagtgcaacacgagtgtatccctcaa
gctatcttgggcatggatgttatctgccaagcaaaatctggaatgggaaaaactgctgtt
tttgttctatcaacactgcagcaaattgagccggttgccggtcaagttgctgcacttgtt
ctatgtcatacaagggaattggcttatcagatctgccacgagtttgagaggtttagcacg
tacttgcctgacatcaaagttgcagtcttttatggaggtgtgaacattaaaatccacaag
gaccttctgaagaatgagtgccctcatattgttgttggaacacctggtcgtgtacttgca
cttgcaagggacaaggaactagcactgaggaatgtgaggcacttcattcttgatgaatgt
gataagatgcttgagtctcttgacatgagaaaagacgtgcaggaaatttttaagatgact
ccccatgataaacaagttatgatgttctctgcaacattgagcaaggaaatccgtcctgtc
tgcaagaaatttatgcaagatccaatggaaatttatgtggatgatgaagccaaactgacc
ttacacggtcttgtacagcattacatcaaattgagtgagctggagaaaaatcggaagctg
aatgatcttctagatgccctggacttcaaccaagttgttatatttgtcaaaagtgtcagc
agggcagctgagctgaacaagttacttgttgaatgcaattttccgtcgatctgtatccac
tctggcatgtcacaagaagaaaggttaacacgctacaagaattttaaagaggggcataaa
aggattctcgtggcaactgatttggttggtaggggcattgacatagaacgtgtcaacatc
gtcatcaactatgacatgccagattctgcagatacttatcttcacagggttggtcgtgct
ggtagatttggaactaaaggacttgcaatcacttttgtagcttcggcctctgactctgat
gtgcttaatcaggttcaagagaggtttgaggtggatattaaggggcttcccgaacagatt
gatacttctacatatatgccatcatag
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