KEGG   Apium graveolens (celery): 141698088
Entry
141698088         CDS       T11340                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03082  ATP-dependent chromatin remodeling
agrv03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    141698088
   03083 Polycomb repressive complex
    141698088
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:agrv03036]
    141698088
Enzymes [BR:agrv01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     141698088
Chromosome and associated proteins [BR:agrv03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     141698088
   HDAC complexes
    Sin3A-HDAC complex
     141698088
    BRAF-HDAC complex
     141698088
    REST complex
     141698088
    SHIP complex
     141698088
    MiDAC complex
     141698088
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     141698088
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    141698088
  Chromatin remodeling factors
   NuRD complex
    141698088
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 141698088
NCBI-ProteinID: XP_074358802
LinkDB
Position
11:complement(170689834..170698397)
AA seq 430 aa
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRINPDTLNLYPNELAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGEVKEIGEREGKFYAINVPLKDGIDDASFNRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWAVETGVLLDTDLPNEIPENEYSKYFAPDYSLKIPGGHIENLNSKSYLGTIK
MQVMENLRCIQHAPGVQMQEVPPDFYIPDFDEDEQDPDERMDQQTQDKHIHRDDEYYEGD
NDNDHNIEGG
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctctaaggacaaaatttcctacttctacgacggagatgtcggtagtgtttacttt
gggccaaaccatccaatgaagccgcatagattatgcatgactcatcatttggttctctct
tatgatcttcacaaaaagatggaaatatatagacctcacaaagcatatcccgtcgagctt
gctcaatttcattcagctgattatgtggagttcttgcaccgcataaaccctgacacgctc
aatctgtatccgaatgaattggcaaaatataatcttggagaagattgtcctgtttttgag
aacttatttgagttctgtcaaatttatgctggtggaacgatagatgctgcacgtagactg
aacaatcagctctgcgacattgctataaattgggctggtggactacaccatgccaagaag
tgtgaagcatctggattttgttacatcaacgacttggttctagggattttggagcttcta
aagtatcatgcacgtgtcctatacattgatatagatgttcatcacggagatggtgtagaa
gaagccttttacttcactgatagggttatgaccgttagttttcacaagtatggggatttg
ttctttcctggaactggcgaagtgaaggaaataggagagagagaagggaaattttatgct
attaatgttcctctcaaggacgggatagacgatgccagctttaatcgacttttcaagaca
attatctcgaaggtcgttgaaacatatttacctggggcgatagttctacaatgtggtgct
gattcacttgccggtgaccgcttaggctgcttcaacctttctattgatgggcatgctgaa
tgtgtcaggttcgtgaaaaagtttaatctgccattactggtaactggaggagggggttat
acaaaagagaatgttgctagatgttgggctgttgaaacaggggttctcttggacaccgac
cttccaaatgaaataccagagaatgaatatagtaaatatttcgccccagattattctctg
aagattccaggggggcacatagaaaacttaaatagcaaatcttatcttggaacaataaaa
atgcaagtgatggaaaacctccgctgcatccaacatgctccaggtgtacagatgcaggag
gttccacctgatttttatattcctgattttgatgaggatgagcaggaccctgatgaacgc
atggatcaacaaacccaagacaaacacatccatcgtgatgatgaatattatgaaggtgat
aacgataatgatcacaatatagaaggtggctaa

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