Apium graveolens (celery): 141698523
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Entry
141698523 CDS
T11340
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
agrv Apium graveolens (celery)
Pathway
agrv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141698523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141698523
03009 Ribosome biogenesis [BR:
agrv03009
]
141698523
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
141698523
Ribosome biogenesis [BR:
agrv03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
141698523
Pre-60S particles
141698523
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IPO5
HEAT_2
IBN_N
TPR_DNAAF5
TPR_IMB1
TOR1L1_N
HEAT_MROH2B_C
HEAT_EF3_N
PDS5
HEAT_MROH2B_1st
UME
TIP120
Dopey_N
Proteasom_PSMB
Motif
Other DBs
NCBI-GeneID:
141698523
NCBI-ProteinID:
XP_074359329
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All DBs
Position
11:complement(54096579..54112033)
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AA seq
890 aa
AA seq
DB search
MAMAAVSEWKAEEEGFREICGLLEQQISPASDKSQIWNQLQHYSLFPDFNNYLAFILSRA
QSKSVEVRQAAGLLLKNNLKNAYTAMPMANQEFIKSELLPCLGAGDRQIRSTAGTIISVL
VQLGGVTSWPELLNTLVKCLDSNDVNHMEGAMDALSKICEDIPQVLDSETPGSSERPINI
FLPRLFQLFQSPHASLRKLSLGSVNQYIMLMPSVLYMSMDKFLQGLFVLANDPNAEVRKL
VCAAFVQLIEVRPAFLEPHLRNVIEYMLQVNKDPDDEVSLEACEFWSAYCEAQLPPENIK
EFLPRLIPVLLSNMAYDDDDESLAEAEEDGSLPDRDQDLKPRFHSSRLHGSEDAEDDDDD
IVNIWNLRKCSAAALDIISNVFGDEILPTLMPYVQAKLSTSDDETWKEREAAVLALGAIA
EGCINGLYPHLSQIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVEGINHPEGHKQFDKV
LMGLLRRILDNNKRVQEAACSAFATLEEEAAEELAPRLDVILQHLMCAFGKYQRRNLRIV
YDAIGTLADAVGGELNQPVHLDVLMPPLIAKWQQLSNADKDLFPLLECFTSIAQALGTGF
SQFAQPVFQRCINIIQTQEIAKVDASAGIQYDKDFIVCSLDLLSGLTEGLGSGIESLVSN
SNLRDLLLQCCMDDASDIRQSAFALLGDLARVCPIHLHPRLSEFLDIAAKQLSTPKLKEN
VSVANNACWAIGELAIKVRQEISPVVISVISSLVPILQHAEGLNKSLIENSSITLGRLAW
VCPELVSPHMEHFMQSWCLSLSMIRDDIEKEDAFRGLCAMVRANPSGALNSLAFMCKAIA
SWREIMSEELRNEVCQVLLGYKQMLRNGVWEQCMSSLEPPVKEKLSKYQV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggcggccgtgagtgagtggaaggcagaagaggaagggtttagagagatctgt
ggattattagaacaacaaatatcaccggcttctgataagtctcagatttggaaccaactt
caacattactctctgtttcctgattttaataattaccttgcttttatcctctcacgcgct
cagagcaaatcagtggaggttcgacaagcagctggcttgcttttaaaaaataacctgaaa
aatgcatatacagccatgcctatggcgaaccaggagtttataaaatcagagctgctaccg
tgtttgggagcaggagataggcaaatcaggtctactgcagggaccattataagcgtgctg
gttcagctagggggtgtcacaagctggccagagctgttgaatacccttgtgaagtgcttg
gacagcaatgacgtaaatcatatggaaggtgctatggatgctttatcaaagatttgtgag
gacattccccaagtgctggattctgaaacacctgggtcatctgaaagacctatcaatatt
ttccttcccagactattccagttgtttcaatccccacatgcctcgttgagaaaactgtcg
ctgggctccgttaatcagtacattatgttaatgccaagtgtactgtatatgtccatggat
aaatttctgcaaggtttgtttgttcttgctaatgatccgaatgcagaggtccggaaattg
gtttgcgcggcttttgttcagctaatagaagttcgtcctgcatttttggagccacacttg
aggaatgtaattgaatacatgctgcaagtcaacaaggaccctgatgatgaagtgtctctt
gaagcctgtgaattctggtctgcgtactgcgaagctcagttaccacctgagaacatcaag
gagttcttaccacgtttaattccagttttattatcaaacatggcttacgatgatgatgat
gagtctcttgctgaagctgaggaagatgggtctcttcctgatcgagaccaggatctaaaa
ccacgttttcattcatcacgccttcatggatcggaggatgctgaagatgatgatgatgac
atagtaaatatttggaacttgaggaagtgtagtgctgctgcccttgatattatttcaaat
gtatttggggatgagatccttccaacgctaatgccttatgttcaggcgaagttatctacc
tctgatgatgagacttggaaagaaagggaagctgcagttttagctctaggtgccatagct
gagggttgcatcaatggtctttatcctcatctttctcagattgttgctttcctcatccct
ctcttagatgacaagtttcccctgatcagaagcatttcctgttggacactttcacgtttc
agcaaatttattgttgagggtattaatcatccagaaggtcataaacaatttgacaaggtc
cttatgggtcttctgcggagaattttagataataacaagcgggtgcaggaggcagcttgt
tcagcttttgcaactctggaagaggaagctgcagaagagctggcgccaagattagacgta
atattgcaacaccttatgtgcgcatttgggaaatatcagaggcggaaccttaggattgtg
tatgatgctattggaactttggcagatgctgttggaggggaattaaatcagcctgtgcat
cttgatgtgctcatgccaccgttgattgctaagtggcagcaattatcaaatgcagacaaa
gacctattcccgctactggagtgctttacttctatagcacaggcattgggtacaggattc
tcacaatttgctcagcctgtattccagaggtgcattaacatcatccagactcaagaaata
gccaaggttgatgcttcagccggcattcagtatgataaagattttattgtctgctctcta
gatcttctatctggactgacagaaggtcttgggagtgggattgaaagtttggtttcaaac
agtaacttgcgggatctgcttctgcaatgttgcatggatgatgcttctgacatccgacaa
agtgcctttgcacttcttggagatcttgcaagagtttgtcctattcatttacacccacgg
ttgtctgaatttcttgacattgctgctaagcaactgagcactccgaaacttaaagaaaat
gtttcagtggccaacaatgcttgttgggcgattggagaactagcaatcaaggtacgtcaa
gaaatatctccagtagtaatttcggtgatatcatcattggttccaatactccaacatgct
gaggggctcaacaagtcactcattgagaacagctctatcacacttgggaggcttgcatgg
gtttgtccggagctagtatcgccacacatggagcacttcatgcagtcttggtgtctatcc
ttatcaatgatacgagatgatatagaaaaagaggatgccttccgtggattatgtgcaatg
gttagagcaaatccatcgggagctttgaattcactggcttttatgtgtaaagcaattgca
agctggcgtgaaataatgagcgaggagctgcggaatgaagtttgccaagttttgcttgga
tataaacaaatgcttagaaatggagtatgggaacagtgcatgtcatctttggaacctcct
gtgaaggaaaagctgtcaaagtatcaagtatag
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