Apium graveolens (celery): 141700019
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Entry
141700019 CDS
T11340
Name
(RefSeq) exosome complex component RRP45A-like isoform X1
KO
K03678
exosome complex component RRP45
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141700019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141700019
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
141700019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
141700019
NCBI-ProteinID:
XP_074359891
LinkDB
All DBs
Position
Unknown
AA seq
450 aa
AA seq
DB search
MEQRLASTWRMSVNETKFIENSLLSDLRVDGRRPFDYRRLIIKFGRDDGSSEVQLGNTHV
MAFVTSQLVQPYRDRPNEGTLSFYTEFSPMADPSFEAGRPGELAVELGRIIDRGLRESKA
VDTESLCVISGKLVWSVRIDVHILDNGGNLVDAANIAALAALSTFRRPECTLGGEDGQEL
IIHPPEVREPIPLIIHHLPVAVTFGFIGKENIVVIDPTHYEETVMGGRMTVTLNTNGDVC
AIQKAGGDGVLPSVIMQCLRIASVKAGDMSSKIKNAVESFNTERALRKIKRHNSSAAVDV
SEPAQKGGTEFSDTHMCRLNLMSEESRVIQSNGMEVDGKLLQQEETIMRDSDAKSFIGGP
SSWDPHSKGVNSDALRASPASQVVEAPTKKLEDPKVDQPSDMELTQPVSDNTLPNEVANT
GLQTSEEKTLEDAIKPKHKRKKKKKASSQQ
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaagattagcaagtacatggagaatgagcgtgaacgaaaccaaatttatcgaa
aattcattgctttctgatctcagagttgatggtcgccgtccttttgattatagacgtcta
attatcaagttcggaagagatgatggctcgtcggaagttcagctagggaatactcatgtt
atggcttttgtgacttcccaacttgttcaaccttatcgagataggcctaatgaagggaca
ttgtctttttatactgagttttccccgatggctgatccttcgtttgaggcggggcgtcca
ggagagcttgctgtggagttgggacgaattattgatcggggtttgagggaaagcaaggcg
gtagatacggaatcactttgtgttatttccgggaagttggtgtggtctgttcgcattgat
gttcacattctggacaatgggggaaatcttgtcgatgctgccaatattgctgctctagct
gccttatcaacattccggaggcctgaatgtactctaggaggcgaagatggtcaggaattg
ataatacatccgcctgaggtgagagagcctattccattaataatacaccatcttcctgta
gcggtaacctttggttttattggtaaagagaatatcgtggtaatcgatccaacccactat
gaggagactgttatgggtggtagaatgactgttacgcttaatacaaacggggatgtttgt
gctatccagaaagcgggaggagatggtgtgttaccgagtgttatcatgcagtgcttgcgt
attgcttctgtgaaggctggcgacatgtcaagtaaaataaagaatgctgttgaatctttc
aatacagaaagagcactaaggaagattaaacggcataattcctctgctgctgttgatgtg
agtgaaccagctcagaaaggaggcactgagttctctgatactcatatgtgtagactgaac
ttaatgtccgaggaaagtagggtcatacaaagtaatggcatggaagttgatggcaaacta
ttgcaacaggaagaaacaattatgagagacagtgatgctaagagcttcattggtgggccc
tctagctgggacccacattcaaagggcgtcaattctgatgcattgagagcttcccctgcg
tcacaagtagtcgaagcacctactaagaagctagaagaccctaaagtcgaccagcccagt
gatatggaattaacccaaccagtctctgataatacgttgccaaatgaagtagccaatact
ggattacaaacaagcgaagaaaagaccctggaggatgctataaagcctaagcacaagagg
aagaagaagaagaaggcatcctcgcagcagtaa
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