Apium graveolens (celery): 141700027
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Entry
141700027 CDS
T11340
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 45-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141700027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141700027
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141700027
Spliceosome [BR:
agrv03041
]
Complex A
U2 snRNP components
U2 related factors
141700027
Complex B
141700027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
Motif
Other DBs
NCBI-GeneID:
141700027
NCBI-ProteinID:
XP_074359904
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MTTAEVTKHKSRREESETREESKKSHRDRERNGEKHRERDRDKSRDRKEKVRRRDGSSDE
EREKSIDDKYKVKEKHRDRERDKSRDSKEKERRRGSPEKEREKSIDDKYKEREKHKDRHR
DREKEKEKEKEKERIREKESEKERIREKEKEKERIREKEKEKAKREKERAREREREDRER
EREKERERAIKEKEREREKREREREEREREREKERRDRDRDERDRKRKERHRDVDHSDGD
DARDREGKRRRREDDHKDRDRERERSKSSRHRDGSVGSSPNKRGDEDPMDKADEKSREDV
IEEEQRKLDEEMEKRRRRVQEWQELKRKTEESEREKLGVNVDVDEQKSGKTWTLEGESDD
EEAALEDKPEKGVQMDEDAKPIDDGVEDMKVDAETDVAAPPNFNGNNAAEDEDDEIDPLD
AFMNQMVLPEVEKLAEASVAEDNSNMKKDKDVHANTKQPRKGLNKSMGRIIPGEDSDSGY
SDADDEDMPVEDDDEDDDEFMKRVKKTKAEKLSIVDHSKIDYIPFRKNFYIEVKEISRMT
SEEVAAYRMQLELKIHGKDVPKPIKTWHQTGLSTKILDTIKKLNFEKPMSIQAQALPIIM
SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPLMSGDGPIGLIMAPTRELVQQIHGDIKK
FAKVVGISCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLV
MDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEVLARKVLNKPVEIQVGGRS
VVNKDITQLVEMRSESDRFLRLLELLGEWYEKGKILIFVQSQDKCDSLFRDLLKHGYPCL
SLHGAKDQTDRESTISDFKSNVCSLLIATSIAARGLDVKELELVINYDVPNHYEDYVHRV
GRTGRAGRKGAAITFISEEDARYAPDLVKALELSEQVVPDDLKALADGFMAKVNQGTEQA
HGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEDDKSDSDDDNDGVRKSSLPTPGQLPN
GLPIPVGPNIVLPGAIPAGPSTILPTAADGAARAAALAAAINLQHNLAKIQADALPEHYE
AELEINDFPQNARWKVTHKETLGPISEWYGAAITTRGQYFPHGKNPGPGERKLYLFIEGP
SEQSVKKAKAELKRTLEDITSQASSLPGSAQPGRYSLV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgcagaggtgactaagcataagtctaggagggaagagtcggaaacaagggag
gagtcgaaaaagagtcatcgagacagggagaggaatggagagaagcacagggagagggat
agagataagagtcgggaccggaaggagaaggtaaggcgacgtgatggctcttctgatgag
gaaagagagaagagtattgatgataagtacaaagtgaaggaaaagcaccgggatagggag
agagataagagtcgagacagcaaggagaaggaacggcgtcgtggctctccggagaaggaa
agagagaagagtattgacgataagtacaaagaaagggaaaagcataaggataggcataga
gacagggagaaggagaaggagaaggagaaggaaaaagagaggattagagagaaggagtct
gaaaaagagaggattagagagaaggagaaggaaaaagagaggattagagagaaggagaaa
gagaaggcgaagagagaaaaggaacgggctagggagagagagcgggaagatagagagagg
gagagggaaaaggaaagggaaagagcaattaaggagaaggaaagagaaagggaaaagagg
gaaagagagagagaagaaagggaaagggaacgggaaaaagaaaggagggacagggacaga
gatgagagggacaggaagaggaaggagaggcaccgtgatgtggatcacagtgatggtgat
gatgctagagaccgtgaaggtaagcggcgtagaagagaagatgatcacaaggacagggat
agagaacgtgaacgaagcaagtcaagtaggcacagagatggtagtgtagggagtagccct
aacaaaagaggtgatgaagatcccatggataaagcagatgaaaaaagtcgagaagatgtt
atcgaggaagaacagcggaagttggatgaggagatggagaagaggaggaggagagttcag
gaatggcaagagttgaaaaggaagacagaggaatccgagagagaaaagcttggagtaaat
gtagatgttgatgaacagaagtctggcaagacatggaccttagaaggggagtctgacgat
gaggaagctgcactggaggacaaacctgaaaagggtgtgcaaatggatgaagatgccaag
cccattgatgatggtgtagaagatatgaaagttgatgctgaaactgatgttgctgcacct
cctaattttaatggaaacaatgctgctgaagacgaggatgatgaaattgacccattggat
gctttcatgaatcaaatggtgttgcctgaagttgaaaagctcgctgaagcttctgttgct
gaagataactctaacatgaaaaaggataaggatgtccatgctaacacgaagcagccacga
aagggtttgaataaatctatgggaagaatcattcctggtgaggattctgattctggttat
agtgatgctgatgatgaagacatgcccgtggaagacgatgacgaagatgatgatgaattc
atgaaaagggtgaagaagacaaaagctgaaaaactatctattgttgaccattcaaaaatt
gattatattccatttcggaaaaatttctatattgaagtgaaagaaatctcaagaatgact
tctgaagaagttgctgcttataggatgcagctagaactgaaaattcatggaaaggatgtt
ccaaagcctattaaaacatggcaccagactggattgtcaaccaaaatattggacacaata
aaaaaactcaactttgaaaagccgatgtctattcaagctcaggcacttcccattataatg
agcggtcgagattgcataggtgtagctaaaacaggatctggaaagacattagcatttgtg
ctgccaatgttgcggcatatcaaggaccagccaccattgatgtcaggagatggtccgatt
gggctcataatggcacccaccagagaacttgtccaacagatccatggtgacataaaaaag
tttgccaaggtagttggtattagctgcgtgcctgtatatggtggttctggtgttgcccaa
cagatcagtgaattaaaacgagggactgaaatcgtggtatgtactccaggtaggatgatt
gacatactttgtacgagtagtggaaaaattacaaatctgcgtagggtcacttatttagtc
atggatgaagccgacagaatgtttgatatgggttttgaacctcagattaccagaattgtt
caaaatactaggccagaccgccagactgtactgttctctgctactttccctcgccaggtc
gaagttctggctcgcaaggtgctgaataaacccgtggagatacaggtgggtggaagaagt
gttgtaaacaaagacataacacagttggtggagatgagatctgaaagtgataggtttctc
aggcttcttgaactgcttggagaatggtatgagaaggggaagatattaatatttgtccaa
tcgcaagataaatgtgattccctgttcagagatttgcttaagcatggttatccttgtctc
tcactacacggggctaaggatcagactgaccgcgagtccaccatttctgattttaaaagt
aatgtatgcagtttgttgatcgctactagcattgctgcgaggggtctagatgtcaaggag
cttgaattggtgattaactatgatgttccaaaccattatgaagactatgtccaccgtgtt
gggcggacagggcgagctgggcgtaaaggtgctgctattacatttatatctgaagaagat
gcaaggtatgcaccagatcttgtgaaagccttggaactctctgaacaagttgtacctgac
gacctaaaagctcttgctgacggttttatggcaaaggtcaatcagggtactgaacaagca
catggaactgggtatggaggaagtggttttaagtttaatgaagaagaggacgaagtcaga
aaagcagcgaagaaagcacaggcaaaagaatatgggtttgaggatgacaagtcagattca
gatgatgataacgacggagtgcgtaaatcctcacttccgacaccgggtcaactgcctaat
gggttgcctattcctgttggcccaaatatagttcttcctggtgcaataccagctggtccc
tccacgattctaccaactgcagcagatggcgctgccagggcagcagcattggctgctgcc
ataaacttgcagcataacctagctaagattcaagctgatgcgctgcccgagcattatgaa
gcggagttggagatcaatgatttccctcaaaatgctaggtggaaggtgacacacaaggaa
actctaggtccaatctctgaatggtatggagctgccatcacaaccaggggacaatatttt
ccccatggtaaaaacccagggcctggtgaaagaaaactttacttgtttattgagggtcct
tctgaacaatctgtgaagaaagctaaagcagaactgaaaagaacactggaggatatcaca
agtcaagcgtcatcccttcctggttctgcacaaccaggacgatactcactggtgtga
DBGET
integrated database retrieval system
