KEGG   Apium graveolens (celery): 141704153
Entry
141704153         CDS       T11340                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    141704153
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:agrv03019]
    141704153
Messenger RNA biogenesis [BR:agrv03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     141704153
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd EIF3I WDR55 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_Vps41 WDR90_beta-prop_4th NBCH_WD40 eIF2A Beta-prop_NUP159_NUP214 WD40_RFWD3 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_HPS5 Cytochrom_D1 CFAP43_N Beta-prop_VPS8 Beta-prop_ACSF4 Tricorn_2nd DUF5711 PEP5_VPS11_N WD40_like WD_LRWD1 Beta-prop_pof12
Other DBs
NCBI-GeneID: 141704153
NCBI-ProteinID: XP_074363569
LinkDB
Position
Unknown
AA seq 321 aa
MKLAWLRSQDGAHDDSLWTTTWVPASDDSPALLLTGSLDETVKLWNPEDLSLVRTNSGHC
LGVISVAAHPSGKIAASASIDSFIRVFDVQSNNTIATLEASPSQVWQLQFNPQGTVLAVA
GGGSASVKLWNTAEWKLVGTLSIPRPEGVKHSEKSGTKKFVLSVAWSPDGRQLACGSMDG
TISVFDVVRTKFLHHLEGHSMPVRSLVFSPVDPRVLISASDDGHVNMYDVEGKTLFVSMS
GHSSWVLSVDVSPDGAAIATGSSDKTVRLWDPKMRAAVQSMTNHTDQVWGVMFRPPGGTG
VRTVQLASVSDDKSISLYEYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaactggcgtggctcagatcccaagacggcgcccacgacgactcattgtggactact
acgtgggtcccagccagcgacgatagccctgctctgctgctcaccggttcgcttgacgaa
acggttaagctgtggaacccggaggatctctctctcgttcgtactaattctggtcactgt
ctgggtgttatatcggtggccgctcatccctctggaaagattgctgcttccgcctcaatt
gatagctttattcgagttttcgatgtccaatccaataatactattgctactctcgaagct
tccccttctcaagtttggcaattgcagttcaatcctcagggtacagttctagcagttgct
ggaggaggtagtgcatcagtcaagttatggaacactgctgaatggaagctggttggtacc
ctgtcaatacctcgtcctgaaggtgtgaagcattctgaaaaaagcggcacaaagaagttt
gttctatcagttgcatggagccctgacggaagacagttggcttgtggatccatggatggg
accatctctgttttcgatgttgttcgcactaaatttcttcaccaccttgaaggccatagc
atgcctgtccgatctcttgtgttttctcctgttgatccaagagtgctcatatcagcctcg
gacgatggccatgtgaacatgtacgatgtagaaggcaagacgctgtttgtgtccatgtcg
ggtcactcgagttgggtattgagcgtggatgttagtcctgatggagcggcaattgctaca
ggatcaagtgacaagactgtgaggctgtgggatcccaagatgagggctgccgtgcagtct
atgaccaaccacacagaccaggtttggggagtgatgtttcgaccaccaggaggaactgga
gttcggactgttcagcttgcaagtgtatcagatgacaagagcatctcactttatgaatac
tcatga

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