Apium graveolens (celery): 141707087
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Entry
141707087 CDS
T11340
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141707087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agrv03021
]
141707087
03041 Spliceosome [BR:
agrv03041
]
141707087
03036 Chromosome and associated proteins [BR:
agrv03036
]
141707087
Transcription machinery [BR:
agrv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
141707087
Spliceosome [BR:
agrv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141707087
Complex B
141707087
Complex C
U2 SnRNP specific factors
141707087
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
141707087
TFTC complex
141707087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
Beta-prop_EML_2
WDR55
Motif
Other DBs
NCBI-GeneID:
141707087
NCBI-ProteinID:
XP_074366172
LinkDB
All DBs
Position
2:20607414..20613473
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYNLTLQQATGIVCAINGSFTGGKSQEIVVARGKVLDLLRPDDNGKIQTILSVEVFGV
IRSLAHFRLTGAHKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
GIDPKGRAVMVGACEKQKLVYVLNRDTSARLTISSPLEAHKSHTIVYSIVGVDCGFDNPI
FAAIELDYSEADQDSTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDRVSELKVKYFDTIPVSSSLCVLKLGFLFAASEFGNHGLYQFQAI
GDDPDVESSSSTLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPLMDMKVSNLFEEETPQ
IFSLCGRGPRSSLRILKPGLAITEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFTNAT
LVLSIGETVEEVSDSGFLDTTPSLDVSLIGDDSLMQVHPTGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVVALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDTMQILSLQSVSSPPDSLLFLEVQASIGGEDGADHPASLFL
NAGLQSGVLFRTVVDMVTGQLSDARSRFLGLRPPKLFSVAVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSCDTLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNEATIPLRYTP
RKFVLQPKRKLLVIIESDQGAYTAEEREAAKKECFEADGMVENGKTEVENGGDDEDKDDP
LSDEQYGYPKAESDKWVSCIRVLDPKTTETTCLLELQDNEAAFSICTVNFHDKEYGTLLA
VGTAKGLQFWPKRSLSAAYIHIYRFVKDGKSLELLHKTQVDGVPLALSQYQGRLLAGIGP
VLRLYDLGKRRLLRKCENKLFPNTINSIHTYRDRIYVGDVQESFHYCKYRRDENQLYIFA
DDSVPRWLTASYHIDFDTMAGGDKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVTCLQKASLIPGGQESLLYGTVMGSLGALLAFSSRDDVDFFNHLE
MHMRQEHPPLCGRDHMAYRSAYFPVKDVVDGDLCEQYPTLPMDLQRKIADELDRTPGEIL
KKLEEIRNKIV
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctatacaatctaactctccaacaagctacaggcattgtgtgtgcaatcaatggc
agcttcactggtggcaaatctcaagaaattgttgtagctcgtggcaaagttcttgatctt
ttaaggcctgatgataatggtaagattcaaactattctttctgttgaagttttcggtgtt
attcgatctttagctcactttcgattaacgggtgctcataaagattatattgttgttggt
tctgattctggtagaattgttattcttgaatataataaagaaaagaatgtgtttgataaa
attcatcaagagactttcgggaaatcggggtgtaggaggattgttcccgggcagtattta
gggattgatccgaaggggagggcggttatggttggggcttgtgagaagcagaagttagtg
tatgtgttgaatagggatacttcggctaggttgactatttcgtcgcctttggaagcgcat
aagtcgcatacgattgtttattcgattgttggggtggattgtgggtttgacaatccgatt
tttgcggcgattgagttggattattcggaggcggatcaggattcgacggggcaagcggcg
aatgaggcgcagaagcatttgacgttttatgagttggatttagggttgaatcatgtgtcg
aggaaatggtcggagcaggttgataatggggctaatatgcttgttacggtgccgggcggt
ggagatgggcctagtggtgtgcttgtttgtgcagaaaactttgtgatttataaaaatcaa
gggcatccggatgtgcgagctgtgattcctagacgggcggatttaccggctgaacgtggg
gttttgattgtttctgctgctatgcacaaacagaagtccatgttcttctttttgttgcaa
actgagtatggtgatatctttaaggttacacttgaccatgataatgaccgagtttctgag
ctgaaggttaagtattttgatacgatccccgttagttcttctttgtgtgtgctgaaactg
ggatttctctttgctgcatcagagtttggaaaccatggtctgtatcagttccaggccatt
ggagatgaccctgatgtggaatcgtcatcttctacgttaatggaaacagaagaaggtttt
caacctgtgtttttccagcccagaggactcaagaacctggtgaggatcgatcaggtggag
agcttgatgccattaatggacatgaaagtctcgaatctgttcgaggaagaaactcctcag
attttttcactttgcgggcgaggtcctcgttcttcactacgtatactgaaaccgggtcta
gcaattaccgaaatggctgtctcccagcttcctggtgttcctagtgcagtttggactgtg
aaaaagaatgttaatgatgaatttgatgcttatattgtcgtttcatttactaatgctact
cttgtcctttccattggtgagacagttgaagaagttagtgacagtggattcctcgatacc
accccttctcttgatgtatcgttgattggtgatgattcactcatgcaagttcatccaact
ggtattaggcacataagggaagatggacgtataaatgagtggagaactcctggaaaaaga
actatagttaaggttgggtctaataggctccaggttgttgttgcattgagtggaggagaa
cttatatactttgaggtggatatgactggccaattgatggaggtcgagaaacatgaaatg
tccggggatgtagcttgcttggacattgcacctgtacctgaagggagacaaagatcccgc
tttctagcagtaggatcatatgacaacactattcgtattttatcattggatcccgatgac
actatgcagattctgagcctgcaaagtgtatcatcacccccagattctctcctttttctt
gaagttcaggcatctattggtggcgaggatggtgcagaccaccctgctagcctttttctt
aatgcaggtttgcaaagtggtgttttatttagaacagtggttgatatggtgacgggtcag
ctttcagatgctcgatctcgtttcttaggacttagacctccaaagctcttttctgttgct
gtgagaggacgccgtgctatgctctgtttgtcaagtagaccttggcttggttatatccac
caagggcatttcttactgactcccctctcatgtgatactcttgaatatgcagcctccttc
tcatctgatcagtgtgctgaaggtgttgttgctgttgctggagatgcgttgagagttttt
actattgagagattgggtgaaacgtttaatgaagcgacaatccctctgaggtacacacca
agaaaatttgtgcttcagcctaagaggaaacttctggtaataattgagagtgatcaggga
gcatacactgcagaagaacgcgaagctgcaaaaaaggagtgctttgaggctgatggtatg
gttgaaaatggtaagacagaggtggagaatggtggtgatgatgaggataaggatgatcct
ctctctgatgagcagtatggttatcctaaagcagagtcagacaaatgggtttcttgcata
agagtccttgatccaaagacaacagaaacaacttgtctgctggagcttcaggataatgaa
gctgccttcagtatatgcacagtaaatttccatgataaagagtatggaactcttttagct
gttggcacagctaaaggtttgcaattttggcctaaaagatcactctcagctgcatatatt
catatttatcggtttgtgaaagatggtaaatcccttgaacttttgcataagacacaggtg
gatggtgtacctcttgcattgtcccagtatcaaggaagattactagctggaatagggcca
gttctcagattgtatgatttggggaaacggagattgcttagaaaatgtgagaataaatta
ttccccaacacaattaactcgattcatacatatcgtgaccgaatttatgtgggtgacgta
caggagtcgttccattattgcaaatataggcgtgatgaaaatcagctgtacattttcgct
gatgattctgtcccaagatggcttactgcatcctaccatatagattttgacacgatggca
ggcggagacaagtttggtaacatatattttgtgcgactaccacaagatgtttctgatgaa
attgaagaagatccaactggtggaaagataaaatgggagcagggaaagctgaatggtgct
ccaaataaagttgaagaaatagtgcaatttcatgttggggatgttgtaacatgcttgcag
aaagcatcccttattcctggaggtcaagagtctcttctttatggaactgtaatggggagc
ttaggggcattgcttgcattcagttcgagggatgatgttgacttctttaatcacttggag
atgcatatgagacaggaacatccacctttgtgtggaagagaccacatggcttatagatct
gcatatttccctgttaaggatgtggttgatggagatctgtgtgagcagtacccaactttg
ccgatggatctgcagcggaaaattgcagatgaattggataggactccaggagagatactt
aaaaaacttgaagaaatccgcaataaaattgtctga
DBGET
integrated database retrieval system
