Apium graveolens (celery): 141707159
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Entry
141707159 CDS
T11340
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141707159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141707159
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
141707159
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Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
OB_HELZ2
Rrp44_S1
CSD2
Toxin_R_bind_C
OB_RNB
Motif
Other DBs
NCBI-GeneID:
141707159
NCBI-ProteinID:
XP_074366285
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All DBs
Position
2:26007939..26024197
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AA seq
934 aa
AA seq
DB search
MLQSKSFVRKTRQGKVVKVVREHYLRDDIYCGAPSCQVCDTKDARLSSLVSSVLVLDTNV
VLNQIDLLENPAINNVVLLSVVLEEAKNKNLSVYNRLRALCSNSLRNFFVFSNEYHKDTY
VKTMVGESPNDRNDRAIRVATQWYQNHLGSRVRVLLITNDRENKRKATEEGISAETVESF
VKSLGQPELLDLLVRPQSDDVHMIDSEDLRPSKRKVIYTEHKPMSEITAGLHSRIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIYGRPNMNRAFDGDIVAVELLPQEQWQEEKSLLLADE
EDEPEEDVHLVPGSADDAPRVANLEGSDGTTNSAPSRPAGRVVGVIKRNWHSYCGSLEPM
PMPAGNAGIAHALFVSKDNRIPKIRIQTRQLENLMDKRIIVAVDSWDCSSRFPSGHYVRT
IGQIGDRDTETEVVLIENDIDARPFSSQVLACLPPIPWSVSPEDLGNPIRQDLRHIRVFS
VDPPGCRDIDDALHCTAFPNGNYEVGVHIADVTNFVHSGTPLDDEATQRGTSVYLVERRI
DMLPKPLTEDICSLRADVERLAFSVIWEMTSEAEIISTRFTKSVIKSCAALSYVEAQARM
DDRRMVDPLTADLRNMNSLAKIMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIR
EANQMVEEFMLAANISVAEKILKHFPMCSLLRRHPSPTKEMLEPLLRTAGAVGISLDVSS
SKALADSLDLAVGDDPYFNKLIRILATRCMSQAVYFCSGDLSPPEFFHYGLAALLYTHFT
SPIRRYADVVVHRLLAASLGIYKLPNIFQDRPQLTSIADNLNYRHRNAQMASRASVELHT
IIYFRKRPTDTQARIVKLRSNGFIVFVPKYGIEGPVYLTAKGEKGGGEWTVDEQQQKIKK
MDGSVSYSILDTVNIHMEVVEPQPNRPKLQLTIV
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagagcaaatcattcgttcgaaaaacacgccaaggaaaagtagttaaggttgtt
agagaacattatttaagagatgatatatactgcggagctccgtcgtgtcaagtttgcgat
acgaaagatgctcggttgagttctttggtatcgagtgtacttgttttggatacgaatgtc
gtgctcaatcagattgatttgcttgagaatccggcgattaataatgttgtgctgttgtcg
gtggtgttggaggaggcgaagaataagaatctttcggtttataatagacttagggcgctt
tgcagcaattctctcaggaactttttcgtgttctctaatgaatatcacaaggatacatat
gtgaagactatggtcggtgaaagtccaaatgatcgtaatgacagagcgattcgcgtggca
actcagtggtaccagaatcatcttggcagccgagtgcgggtcttactgattacaaatgac
agggaaaataagaggaaggctactgaagagggcatttctgcagagacagttgagtcattt
gtaaaatcgcttggtcaaccggaattgcttgatcttctcgttcgtccacaatctgatgat
gttcatatgatagattctgaagatcttagaccttcaaagagaaaagttatttacaccgag
cacaagccaatgtcagaaattactgctggcttgcatagtagaatttaccatcaaggaaaa
cttcgggttaaccgttacaatccatttgaagcatatgttgggagtgaaagtattggtgat
gagatcatcatctatggacgtcccaacatgaatcgggcttttgatggtgatatagtagcc
gttgaactacttccacaagaacaatggcaggaagagaagtctctacttttagccgatgaa
gaagatgaaccggaagaagatgttcatcttgtcccgggcagtgctgatgatgctcccaga
gttgcaaatctagaaggatcagatggaaccacaaactctgccccttcgcgtccagctggg
cgtgttgttggtgtcattaagcgtaactggcactcttactgtggatctttagagccaatg
cctatgcccgcaggtaatgctggtatagcccatgcattatttgtctctaaagataacaga
attccgaagataagaattcaaactcgacagcttgagaatcttatggataaaagaattatt
gttgcggttgattcctgggactgttcgtctcgttttccttctggtcactatgtgagaact
ataggacaaataggtgatagagacactgaaaccgaggtagtgttaattgagaatgacata
gatgcaagaccattttcttcccaggtcttggcttgcctgccacctattccttggtctgtg
tctcccgaagacttggggaatccaattaggcaggatttgcgtcacatacgtgtctttagt
gtcgatcctccaggatgcagggacattgacgatgcgttacattgtactgcttttccaaat
ggaaactatgaagtaggagtccatattgccgacgtcacaaactttgttcattccggaact
cctcttgatgacgaggctactcaaagaggtacttctgtctaccttgttgagcggcgtatt
gacatgcttccgaagcctctgacagaagatatatgttctcttcgagctgatgttgagagg
ttggccttttctgttatttgggaaatgacatctgaagccgaaattatttctacaagattt
acaaaaagtgtaatcaagtcatgtgcagcattgtcttatgtggaagcgcaagcaaggatg
gatgacaggcgcatggtggatcctttgactgcagatttaagaaatatgaattctttagca
aagataatgaggcaaaggcggattgaaagaggggcactgacgcttgcttctgctgaagtc
aagtttcaaatagatactgaaactcatgatcctctagatattggtatgtatcaaattagg
gaagcaaaccaaatggttgaggaatttatgcttgctgctaacatttcagttgctgaaaaa
attctgaaacattttccaatgtgttcactgttaaggcgccatcctagtccaactaaagag
atgcttgagcctttgctacgtaccgctggtgctgttggtatcagtttggacgtgtcttca
tcgaaggcactagctgattctcttgatcttgcagtgggtgatgatccatacttcaataaa
ttgattcgtatacttgcaacgagatgcatgtcacaggcagtatatttctgtagcggggat
ctcagccccccagagtttttccattatggacttgcagcgctgctgtatacacattttacc
tcccctatcaggagatatgcagatgttgttgtacacagattgcttgctgcatctttagga
atatacaagcttccaaatattttccaagacagaccccaacttaccagtattgctgataat
ctaaattatcggcatagaaatgcgcaaatggcaagccgtgcttcagtagagctccataca
atcatatatttcaggaaaagacccacagatacccaagccagaatagtgaagctaagatca
aacggctttattgtatttgtacccaaatatggtattgaaggacctgtatacttgactgcg
aaaggtgagaagggaggaggagaatggacggtagatgagcaacaacagaagattaagaaa
atggatggcagcgtcagctacagcattctcgatacggtgaacattcatatggaggttgta
gagccccagccaaatagacccaagcttcagctgacaatagtctaa
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