KEGG   Apium graveolens (celery): 141707410
Entry
141707410         CDS       T11340                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03030  DNA replication
agrv03410  Base excision repair
agrv03420  Nucleotide excision repair
agrv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    141707410
   03410 Base excision repair
    141707410
   03420 Nucleotide excision repair
    141707410
   03430 Mismatch repair
    141707410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:agrv03032]
    141707410
   03400 DNA repair and recombination proteins [BR:agrv03400]
    141707410
Enzymes [BR:agrv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     141707410
    6.5.1.6  DNA ligase (ATP or NAD+)
     141707410
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     141707410
DNA replication proteins [BR:agrv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    141707410
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     141707410
DNA repair and recombination proteins [BR:agrv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     141707410
   NER (nucleotide excision repair)
    Other NER factors
     141707410
   MMR (mismatch excision repair)
    Other MMR factors
     141707410
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HTH_36
Other DBs
NCBI-GeneID: 141707410
NCBI-ProteinID: XP_074366656
LinkDB
Position
2:complement(51407276..51417994)
AA seq 797 aa
MFTLHSRLFLLPRAPNLSTLSHRLSLILKPNYSIVLKPLFLTNPNFNSIMSSSRPSAFDA
LMSKARAAAKKKPQSEASPTKKRKTQELVSPKVVENSSLDSAHQVFDKKPKPENVGECVE
SEGTEVLVNGCEKGKINLSLDDKLVVKKAGAVSLDESVVELKKKAASFDPKKAAFWGEGE
KVPFSFVARVFDAISKESGRIVITEIVCNMLRTVIQTSPDDLVPVVYLLANRIAPAHEGL
ELGIGDASIIKALAEACGCKEAQIKKQYKDLGDLGLVAKASRSSQSLMRKPEALTVTKVF
NTFQLIAKESGKDSQEKKKNHIKALLVAATDFEPLYMIRLLQTKLRIGLAEQTLLAALGH
AAYYSEKRFKAPANIDSPLEEAAKIVKQVYSVIPVYDKIIPAILTGGVWDLPKTCNFSPG
VPVGPMLAKPTKGVSEILDKFQDMEFTCEYKYDGERAQIHYMGNGTVEIYSRNAERNTGK
FPDVVSAISRLKKSSVTSFVLDCELVAYDREKKKILPFQILSTRARKNVVISDIKVEVCI
FAFDILYLNGQTLLQEQLNVRKEHLYESFEEEPGYFQFATAKTSTDLEEIQKFLEDSVDA
SCEGLIIKTLSRDATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTGVYGA
FLLACYDSNNEVFQTICKIGTGFTEEVLEQRSTSLRSKVIPKAKSYYSYADKISPDVWFE
PTEVWEVKAADLTISPVYCAAIGIVDSDKGISLRFPRLVRIREDKTPEQASSSELVADMY
NAQKHTQKHNEDDDKDE
NT seq 2394 nt   +upstreamnt  +downstreamnt
atgtttacactccactcacgactctttctcctccctcgcgcacccaatctctccactctc
tctcatcgtctctctctaattctcaaacccaattattcaattgttctcaaaccccttttt
ctaacaaaccctaatttcaattccatcatgtcttcttcacgcccctctgctttcgatgct
ttaatgtcaaaagctcgggccgctgcgaagaaaaaaccgcaatccgaggcttctccgacc
aagaaacgcaaaacccaggaattagtttctccgaaagtggtcgagaattcaagtttggat
agtgcacaccaggtgtttgataaaaagcctaaaccagaaaatgtgggggaatgtgttgag
agtgaggggactgaggttttggtaaatggttgtgagaaagggaagattaatttgagtttg
gatgacaaattggtggttaagaaggcgggggccgttagtttggatgagagtgttgtagag
ttgaagaagaaggcggcgagttttgatccgaagaaagctgcattttggggggagggtgag
aaagtgcctttttcgtttgtggctagagtgtttgatgctattagtaaggagtcgggtagg
attgtgatcacggagattgtgtgtaatatgttgaggactgtgatacagacgtcgccggat
gatttagttccggttgtttatcttttggcaaataggattgctcctgctcatgaggggttg
gagcttggaattggggatgcgagtattattaaagctctggctgaagcttgtggatgcaaa
gaagctcagattaagaagcagtataaagatttgggagacttgggtttggttgcaaaagcc
agccgttcatcacagtctttaatgcgtaaacccgaggcattaactgtcactaaggtcttt
aacacttttcagctcattgccaaggaatctggaaaggatagtcaagagaagaaaaaaaac
catattaaggcacttcttgttgctgcaactgattttgagcctctctatatgatccgcttg
cttcagacaaaattacgaattggtttggcagagcaaactttgttggctgctctgggtcat
gctgcttattacagtgaaaaacgtttcaaagctcctgcaaatatagattctcctctggaa
gaggccgcaaagattgttaaacaagtttactctgtgattcctgtctatgacaaaataatc
cctgccattcttactggtggtgtatgggatcttccaaagacatgcaatttttcacctggt
gttcctgttgggccaatgctggcaaaaccaactaaaggagtgtctgagattttggataag
tttcaagatatggaattcacatgcgagtacaagtatgatggagaacgtgctcagatacac
tatatggggaatggtacagtcgagatatacagtcgaaatgctgaaagaaatactggaaag
tttccagatgttgtttctgctatttcaagactaaagaagtcatctgttacttcatttgtt
ttggattgcgaacttgtcgcttatgaccgtgagaaaaagaaaatcttacctttccagatt
ttaagcacacgtgctcgtaaaaatgttgtgataagtgacatcaaagttgaagtttgcatt
tttgcattcgatattctatatctgaatggtcagacacttctgcaggagcaacttaatgtt
cgcaaggaacatctctacgagtcatttgaggaagaacctggctattttcagtttgctaca
gcaaaaacatccaccgatcttgaggaaatacaaaagtttcttgaggattctgttgatgca
agctgtgagggattgattatcaaaacattaagtagagatgctacatatgaaccttcaaag
aggtcaaataactggctaaaactgaagaaagattacatggaaagtattggcgattcactt
gatctagtacctattgctgctttccatggccgaggaaaacgaactggagtatatggagcg
tttcttcttgcatgttatgatagcaacaatgaagtattccaaaccatttgtaaaatcggc
actggatttactgaagaagtgcttgagcagagatctaccagtcttcgttcaaaagtgatc
ccaaaggcaaagtcctactacagttacgcggataagatttctccagatgtatggttcgaa
ccaacggaggtttgggaggtcaaagccgcagatttgactatcagtcctgtctattgtgct
gccattggtattgtggattctgacaagggtatctctctccgatttcctcggcttgttcgt
atccgagaagataagacaccagagcaagcttcatcatcagaattggtagctgatatgtat
aatgctcagaagcacacccaaaagcacaacgaagatgatgataaagacgagtga

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