Apium graveolens (celery): 141707571
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Entry
141707571 CDS
T11340
Name
(RefSeq) uncharacterized protein LOC141707571
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141707571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141707571
03041 Spliceosome [BR:
agrv03041
]
141707571
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141707571
Spliceosome [BR:
agrv03041
]
Complex B
Other components
Prp19-related factors
141707571
Complex C
141707571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
UTP6_C
TPR_19
NRDE-2
AbiH
Motif
Other DBs
NCBI-GeneID:
141707571
NCBI-ProteinID:
XP_074366902
LinkDB
All DBs
Position
2:complement(79839244..79842317)
Genome browser
AA seq
908 aa
AA seq
DB search
MSIPKEYYPSQDDLIYEEELLRNPFSLKLWWRYLIARTDSPFEKRRLIYERALKALPGSY
KLWYAYLRERLELVRNFPINHFEYKSLNNTFERALVTMHKMPRIWIMYLLTLTHQKLVTV
TRRCFDRALCALPVTQHDRVWEIYLVFVSQRGVPIETSLRVYRRYLKYDPGHIEEFIEFL
VESELWQEAAERLAGVLNDDSFYSIKGKTKHMLWLELCDLLTQHAGEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLLMKARDIFEEGMTTVMTVRDFSVIFDAYSQFEESML
ALKMEDMSESEEEDEEGLAVEDEEEDEGDRLNVGDIKLKLKKLWLSDDKDVNLGLARLEN
LMDRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPARQLETYTQAVRTIDPMKAVGKPHT
LWVALAKLFETHNGINDARVIFDEAVQVGYKAVDNLASVWCEWAEMELRHKNFKVALEVM
RRATAEPSVEVKRRVAADGNEPVQIKLHKSLRLWTFYVDLEESLGTLESTRAVYERILDL
RIATPQIIINYAMLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKL
ERARELFEHAIEMAPAEAVKPLYLQYAKLEEDHGLAKRAMSVYDQATKAVPASEKLSMYQ
IYIARVAEIFGVPKTREIYEQAIESGLPDKDAKTMCIKYAELEKSLGEIDRSRGIYKHAS
EFADPRSDADFWSKWHEFEVQHGNEDTFREMLRIKRSVTAKYSQSHIILPEYMMQKDLKP
NSDEATDPQKRNGILGDDMAALERQLVPPTNDAIAKDSTRLLGFVSAGVESQTDGGLKVA
AYKEDIELPDESDSEDEGNVEITQKDIPETVYGGIRKRSEEDEDADKGKDGDDNLGALER
IKRMKRGG
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcccgaaagagtattacccaagtcaagatgacttgatctacgaagaagagctt
ctccgcaacccttttagcttaaagctctggtggcgctacttaatcgcccgcaccgactcg
ccgttcgagaagcgccgcttgatctacgaacgtgcactcaaagctctacccggaagctac
aaattatggtacgcttatttacgcgaacgtctcgaattggttcgaaactttcccattaat
catttcgaatataaatcgcttaataatacttttgaaagagctttagttactatgcataaa
atgcctagaatttggattatgtatttgttgactttgactcatcagaagttagttactgtt
actagacgctgtttcgatagggcgttgtgtgcgttgcctgttacgcaacatgatagggtt
tgggagatttatttggtgtttgtgagtcagagaggggttcccattgagacgtcgcttagg
gtttataggaggtatttgaagtatgatcccgggcatattgaggagtttattgagtttttg
gtggagtcggaattgtggcaagaggctgcggagaggttagccggggttttgaatgacgat
tccttttattcgattaaagggaagactaagcatatgttgtggttggagttgtgtgatctg
ttgacgcagcatgctggggagatttcggggttgaatgttgatgcgattattaggggtggg
attaggaagttcacggatgaggttgggaggctgtggacttcgttggcggattattatatt
aggaggaagttgttgatgaaggcgagggatatttttgaagagggaatgaccacggttatg
actgtgagggattttagtgtgatatttgatgcgtattcgcagtttgaggagagtatgctt
gctttgaagatggaagatatgagtgagagtgaggaagaggatgaggaagggttggcggtt
gaagacgaggaggaagatgaaggggatcgattgaatgtgggagatattaaattgaagcta
aaaaagctttggttgtctgatgataaagacgtgaatttgggattagctcgtttagagaat
cttatggataggaggccggaattagctaatagtgtgctgcttcggcaaaacccgcataat
gtggaacagtggcatagaagagttaagatttttgaagggaatcctgctagacaacttgag
acctatacgcaagctgtacggactattgatccaatgaaagctgtggggaagcctcatact
ttgtgggtggctttagctaaattgtttgaaactcacaatggtattaacgatgctagggtg
atatttgatgaagctgtacaagttggctacaaagctgtggataatttggctagtgtatgg
tgtgaatgggcagagatggaattaagacacaagaattttaaggtagctctggaggtgatg
aggcgggccacagctgagccatcagttgaggtcaaacgtagagtggctgccgatggcaat
gaaccagttcaaataaagctgcacaagtcactccggctttggaccttctacgttgacttg
gaggagagcttaggcaccttggagtcaactcgtgcagtgtatgagagaatactagaccta
aggatcgccacaccccaaatcataatcaattacgctatgctcttggaagaccataagtac
tttgaggatgcttttaaggtctatgaacgaggcgtgaagatattcaaatatccacatgta
aaggatatatgggtgacttatctctctaaatttgttaaaagatacggaaagtcaaagctc
gaacgagccagagagctatttgagcatgctattgaaatggcccccgctgaagcagtgaag
cctttgtatttgcaatatgccaaattggaagaggatcacggtctagccaagcgagcaatg
agcgtttatgatcaagcaacaaaggctgtccctgccagtgaaaaattgagcatgtaccaa
atatacatagcacgtgtagctgaaatatttggggtaccgaaaaccagggaaatatatgag
caagcaattgaatctgggcttccggacaaggatgcaaaaacaatgtgtataaaatatgca
gaacttgagaagagtttgggagagatagatcgctctcgtggaatatacaagcatgcatct
gagtttgcagatccaagatctgatgctgacttttggagcaagtggcacgaatttgaggta
caacatggtaatgaagatactttccgggagatgctacgtattaaaaggagtgttactgca
aaatatagtcagtcacacattattcttccagagtatatgatgcaaaaggatctaaagccc
aattcagatgaagcaacagaccctcagaagaggaatggaattcttggagatgatatggct
gctcttgagaggcaactagtacctcctacaaatgatgctattgccaaggatagcacacgg
ttgctgggatttgtgagtgcaggagttgagtcacagacagatggaggtcttaaggttgct
gcttataaagaagacatagagctgccagatgaaagtgatagtgaagatgaaggtaatgtt
gagatcacccagaaagatattccagaaactgtttatggaggcatacggaaaagatccgaa
gaagatgaagatgctgacaagggcaaggatggtgatgataaccttggtgcacttgagcgt
ataaaaaggatgaagcgaggtgggtaa
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