Apium graveolens (celery): 141707628
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Entry
141707628 CDS
T11340
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
agrv Apium graveolens (celery)
Pathway
agrv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
141707628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141707628
04121 Ubiquitin system [BR:
agrv04121
]
141707628
03036 Chromosome and associated proteins [BR:
agrv03036
]
141707628
03400 DNA repair and recombination proteins [BR:
agrv03400
]
141707628
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
141707628
Ubiquitin system [BR:
agrv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
141707628
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
141707628
DNA repair and recombination proteins [BR:
agrv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
141707628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
zf-HC5HC2H
BRCT
zf-HC5HC2H_2
zf-C3HC4_3
zf-C3HC4_2
zf-C3HC4_4
zf-RING_5
zf-C3HC4
zf-RING_6
zf-RING_UBOX
PHD_NSD
zf-RING_10
Prok-RING_4
zf-RING_2
RTT107_BRCT_5
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
141707628
NCBI-ProteinID:
XP_074366994
LinkDB
All DBs
Position
2:complement(88939022..88944386)
Genome browser
AA seq
582 aa
AA seq
DB search
MEEDCRHRTTPWFTHLLNLGSALKCPKCLELLYGPVLLPCDHFVCSSCIYDQTENGSRCP
SCNRQYVARAETRSARYMENVISVYKSLCSIPLADLFHPPASGENSISGQPLCFVNGCKM
NTSIGQKGDPCGVEVDRSTQPKPPDKPINGNLVDIAVKKINMDQMKSESSLMPCSFSEIN
KDSKKRKKSDSSEACNHKCGFCHSSKVTDESGPILHIANQELVHEDLASFPKVISVHKVC
IDWTPMVYFEDEKIKNLEMELARAGKLRCSGCGEKGAALGCYVKACRKTYHVPCALKISN
CRWDYDNFLMLCPSHKSNKFPRKMLQRDKCARVEAGPLATQLTSKQSEFWSSSSHGVKTW
VFCGSALSSMDLCYLVKFARCCGATVARFWRPDITHVVTSADANGACMRTMKVLMAILYG
RWIVSMDWIKSCAEANRPVDENHYEVALDNHGARNGPKIGRQLAIDNGPKLFGSHIFYFS
GNFDSALLNHLKTLALSAGGTVIENKEHLDSQSCDAKETLRTLIVYDGDHINRCTSEDKD
YHALEIPEEAEDLARKIGSRVVQHAWILESVAACKLQPVSCY
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagattgtcgtcatcggacaactccatggttcactcacctcctcaatctcggc
tctgccctcaaatgccccaaatgtttggagttgctttatgggcctgttttgctcccatgt
gatcattttgtatgcagttcatgcatttatgatcagacagaaaacggttccagatgtcct
tcttgcaataggcaatatgttgctcgagcagagacccgatctgcacgttatatggaaaat
gtgatatcagtctataaaagcttgtgttcgattcccctagctgacttatttcatccacct
gcttctggggaaaattccatcagtggacaacctctgtgttttgtgaacggttgtaaaatg
aatacgagtattggccagaaaggagatccatgtggtgtagaagtggataggtcaacacag
cccaagcctcctgataagccgataaatgggaatctagtcgacattgcagttaagaaaatc
aacatggaccaaatgaaatcagagtcgtcactaatgccttgttcctttagcgagatcaat
aaggactccaagaagcgaaagaaatcagattcttcagaagcatgcaaccataagtgtggc
ttttgtcattcttctaaagtgactgatgaatcggggccaattctacatattgccaatcaa
gagttagtacatgaagatttggcctccttccccaaggttattagcgttcacaaggtttgc
attgattggacacccatggtttactttgaggatgaaaagataaaaaatttagagatggaa
ctggctagggcaggtaagctaagatgtagtggctgtggggaaaaaggagcagcacttggc
tgctatgtgaaggcttgtcggaagacttatcacgtaccttgtgcgttaaagatatcaaat
tgcagatgggattatgacaactttctaatgctgtgcccatctcacaagtccaacaaattt
ccaaggaaaatgttacagcgtgacaaatgtgccagagtagaagccggtccactggcaacc
caactgacttccaagcagtcagaattctggtcatcatcatctcatggagtaaaaacttgg
gtattctgtggatctgctttgtcttccatggatctgtgctatctggtaaagtttgctaga
tgctgtggtgcaactgtagcaaggttttggagaccagatataacccatgtagttacttcc
gcagatgcaaatggtgcctgtatgaggacaatgaaagtcctcatggcaattttatacgga
cgatggatcgtctcgatggactggataaaatcttgtgcagaagcaaacagaccagtggac
gaaaaccattacgaagttgcactagacaatcatggtgctcgcaatggccccaagatcggt
agacagctagctatagataatgggccaaagctatttggtagccatatattctacttcagt
ggaaattttgactcggcgctcctgaatcaccttaaaactttggccctatctgctggtgga
actgtcattgagaacaaagagcaccttgactcacaaagttgtgatgccaaggagactttg
agaactttaattgtttatgatggcgaccacattaatcgatgcacatcagaagataaagat
taccatgcgctggaaataccagaggaggcagaagatttggctcgtaagattggttctagg
gttgttcaacacgcatggattttggaatcagttgcagcatgtaaattgcagcctgtgtcc
tgctattga
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