Apium graveolens (celery): 141707649
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Entry
141707649 CDS
T11340
Name
(RefSeq) protein CHROMATIN REMODELING 8
KO
K10841
DNA excision repair protein ERCC-6
Organism
agrv Apium graveolens (celery)
Pathway
agrv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
141707649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
agrv03036
]
141707649
03400 DNA repair and recombination proteins [BR:
agrv03400
]
141707649
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
141707649
DNA repair and recombination proteins [BR:
agrv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
141707649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
HDA2-3
WHD_SOWAH
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
141707649
NCBI-ProteinID:
XP_074367042
LinkDB
All DBs
Position
2:91781517..91789582
Genome browser
AA seq
1210 aa
AA seq
DB search
MKQEEEEHNAFLSSLGVTSANPEDIERDVLQQARSNAGGNSESGGTVDHKAIDTTENTDT
ISSLRHVELYNKLRAVNIEIDAVASTVEQIDFVKSDDHASDEVTGKEQSSSNPWSSDPIQ
QALASDRLRSLKKTQIQLEDELIKCKGKSADGNNYEKLLQDVVQEEPKRKRKEDPKLSGN
QKKRRKAVTFGDDDDFDSVLNAASVGFVETERDELVRKGILTPFHKLKGFERRIQETGPS
SKKYLPGDVDNTDDFASSSIARAARSISQAAEARPTTKLLDPEYLPKLDAATRPFQRLRA
PPRIPQSLRNAPEIDKDLRRKKKRPSPGKKWKKGTSREVSNLEEIEDLRTSSNEEDNQES
VDDEPSFVTLEGGLNIPETIFTKLFDYQKVGVQWLWELHCQKVGGIIGDEMGLGKTIQVL
AFLGALHSSNLYKPSIIVCPVTLLRQWKREAQKWYPAFHVEILHDSAHDSSTRKKPVESD
ESDYESESEVRVNSSRRNNKKWDTLISRVLKSDSGLLITTYEQLRLLGEKLLDIGWGYAV
LDEGHRIRNPNAEVTLVCKQLHTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPIFE
AEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIVPYLLRRMKADVNAQLTKKTEHVLFC
SLTSEQRSVYRAFLASAEVEQIFNGNRNSLYGIDVMRKICNHPDLLEREHSYGNPDYGNP
ERSGKMKVVAEVLKVWKQQGHRVLLFAQTQQMLDILESFLIACCYTYRRMDGITPVRQRM
TLIDEFNNSDEVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIGQTK
DVTVFRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKSRDMKDLFILTDDGEHGF
TETSSIFSQLAEDVNVVGTHKNNDDNANVNKPTASNLSNDASEIGNDSNIKLSNKGKEKA
ENSGKETDEESNILQSLFDAHGIHSAVNHDLIMNANDGEKLKLEEQASQVAQRAAEALRQ
SRVIRSRESIAVPTWTGKSGAAGAPSSVRQKFGSTVNTQLVGSSRPSEGLLNSEGRKLSL
SAGAANGKALTSSELLARIRGNQERAAGDGIEQQFGQASSSTGRANFGNNSAVKSSNLSG
VQPEVLIRQICTFLQQRGGRTVSASIVQHFKDRIPSKDLPLFKNLLKEIATLEKNPSGSS
WVLKPEYKEE
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaagaagaagaagaacataatgcgttcttgagtagtttgggtgtcacatctgcg
aaccccgaagatatcgagcgtgatgtactacaacaggcaagaagcaatgcggggggaaac
agtgaatccgggggaactgtggatcacaaagctattgatacaacagaaaacactgataca
atatcatctttgagacatgtggaactctataacaagttgagggctgtaaatattgaaata
gatgctgtcgcgtcaactgttgaacaaatagactttgtaaagagtgatgatcatgcttct
gatgaagtcactggaaaggaacaaagttcttctaatccttggtccagtgatccaattcag
caagctctggcttctgatagattaagaagcctgaagaagacacagattcaacttgaggac
gaactcatcaaatgtaagggcaaatcggctgacggtaataattatgagaagctgttacaa
gatgttgttcaggaagagccaaagcgtaagcgaaaagaagatccaaaattaagtgggaac
caaaagaagcgaaggaaggcagttacatttggcgatgacgatgactttgattcagtttta
aatgcagcatctgtaggctttgttgaaactgaaagggatgaattagttcgaaaaggaatt
ttaaccccctttcataagcttaagggttttgagcgtcgtatacaagaaacagggccatct
agtaagaaatacttgcctggggacgtagacaatacagatgattttgcttcctctagcata
gctagagctgctagatcaatatcacaggccgcagaagctcgcccaacaaccaagctttta
gatccggaatatctacctaaactggacgccgcaactcgtccttttcaaaggcttagagca
ccgccaagaatacctcagtctcttagaaatgcgcccgaaattgacaaagacttgagaagg
aaaaagaaaaggccttcacccggaaagaaatggaaaaagggaacttctcgagaagtttca
aatctagaagaaattgaagatttaagaacctctagtaatgaagaagataaccaagagtct
gtagacgatgaaccgtcatttgtgacacttgaaggtgggctaaatattccagagaccatt
ttcaccaaactttttgactaccaaaaggtgggggttcaatggctttgggaacttcattgc
cagaaagtaggtggaattattggagacgagatggggcttggtaaaaccattcaagtccta
gcttttcttggagcattgcattcaagtaatttgtacaaaccaagcatcattgtttgtcct
gtcactctattgcgtcaatggaagcgggaagcacaaaaatggtacccagcatttcatgtg
gaaatattacatgattccgctcatgactcttctaccaggaagaagccagtcgaatctgat
gagagtgattatgaaagtgagtctgaggtcagggtaaattcatctaggcggaacaacaaa
aaatgggatactttgataagtcgtgttttgaaatcagattctggattgttaattaccacc
tacgagcagctccggttgctaggggaaaaacttcttgatattggctggggttatgcagtt
cttgatgaaggccatagaatccgaaatccgaatgccgaagtgactctagtttgcaaacag
ctacataccgttcatcgtataataatgactggtgcaccgattcagaataagttgtctgaa
ctatggtctctgtttgattttgtattccctggaaaattgggtgtgcttcctatatttgaa
gctgaatttgcggttcccatatccgttggtggttatgctaatgcctcacctttgcaagta
tcaactgcctatagatgtgctgttgttttgcgtgatttaatcgtgccttacctcctccgg
cgtatgaaggctgatgtcaatgcccaactaacaaagaaaactgaacatgtactcttctgt
agcctcacttcagagcagcgatctgtgtatagggcatttcttgctagcgctgaggttgag
cagatctttaatgggaacaggaattctctttatggaattgatgtgatgcgaaagatctgc
aaccatcccgatctgcttgaaagggaacattcctatgggaaccctgactatggaaatcct
gagcgcagtggaaaaatgaaagttgttgctgaagttctcaaagtatggaagcagcaaggt
catcgtgttcttctgtttgctcaaactcaacaaatgcttgacattttggagagtttttta
attgcttgttgctatacataccgtagaatggatggcatcactcctgtaagacagagaatg
acattaatagatgaatttaacaattcagatgaagtcttcatcttcattttaacaactaag
gttggtggtctgggaacaaatcttacaggtgccaatagggtgataatatttgaccctgat
tggaatccttcaaccgatatgcaggccagggagcgtgcttggcgtattggtcagacaaaa
gatgtcacggtttttagattgataactcgtggaacaattgaagagaaggtgtatcaccgg
caaatttacaagcattttctcactaacaaaatattgaagaatccgcagcagaaaagattc
tttaaatcccgtgacatgaaggatctctttatacttactgacgatggagagcatggcttt
actgaaacctctagcatatttagccagctagctgaggatgttaatgttgtcgggactcat
aaaaacaacgacgataatgctaatgtgaacaaaccaactgcatcaaatctaagtaatgat
gctagtgagattggaaatgactcaaatatcaaattatccaataagggcaaagagaaagct
gaaaatagtggcaaagaaactgacgaggaatcaaatatcttacagtctctttttgatgct
catgggattcatagtgcggtgaaccatgatctaatcatgaatgctaacgatggagagaag
ctgaaactagaggaacaagcttctcaagttgcacagagagcagctgaagcattacgccag
tcacgggtaattagaagtcgggagagtatagctgtcccaacctggactgggaaatcagga
gctgctggggcaccatcatctgttcgtcaaaagtttgggtcaactgttaatactcagtta
gttggtagttctcggccttctgaaggattgctgaacagtgaagggagaaagttgagtctt
tccgctggagcagctaatggcaaagcattaacttcatccgagttgctggcgaggattaga
ggaaaccaagaaagagcagcgggtgatgggattgaacagcaatttggccaggcctcaagc
tctactggaagagcaaacttcggaaataatagtgctgtgaagtcatcaaacttgtctggg
gtacagccagaagtgttaatacgtcagatctgcacatttttacaacaaagaggtgggaga
accgtttcagcgagtatagtacagcatttcaaggacaggattccctccaaagaccttcct
ttattcaagaatcttttgaaggaaatcgccactttggagaaaaatcctagtggatcttct
tgggttcttaagccagagtataaggaggaataa
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