Apium graveolens (celery): 141707770
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Entry
141707770 CDS
T11340
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
agrv Apium graveolens (celery)
Pathway
agrv03015
mRNA surveillance pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141707770
09123 Folding, sorting and degradation
03018 RNA degradation
141707770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141707770
03041 Spliceosome [BR:
agrv03041
]
141707770
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141707770
mRNA cycle factors
Stress granule specific factors
141707770
Spliceosome [BR:
agrv03041
]
Complex C
Other components
Complex C specific factors
141707770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
RRM_MARF1
BRAP2
Chromo_MORC2_6th
GH97_C
Motif
Other DBs
NCBI-GeneID:
141707770
NCBI-ProteinID:
XP_074367219
LinkDB
All DBs
Position
2:115479651..115487613
Genome browser
AA seq
630 aa
AA seq
DB search
MAQVQVQTQGVNSSGNQFVVPMSSLYVGDLDWNVSDSQLYDLFNQIGQVVSVRVCRDLVT
GRSLGYGYVNYSNPQDAVRAMELLNFTPLNGKLIRIAKSLRDPTVRKSGSGNIFIKNLDK
TIDQKALQDTFSTFGNIISCKIVTDDSGQSKGYGFVQYDSDEGAQKAIEQLNGMLLNDKQ
VYVGPFLRKQERELATDKSKFTNVYVKNLAEATSEEDLKKIFGEFGEITSVVVMRDGDGK
SKCFGFINFEDADAAARSVETLNGKKFDHKEWYVGKAQKKSEREMELKVKFEQNLKETAD
KSQGLNLYVKNLDDSLGDDKLKELFTPFGTITSCKVMRDPTGTSKGSGFVAFSIPEEASR
ALSEMNGKMVFNKPLYVALAQRKDDRRARLQAQFSQMRPIAMAPPVGPRLPMYPPGGPGL
GQMFYGQAPPAFIPPQPGFGYQQQLIPGMRPPAGAPMPNFFVPVAQHGQRPGGRRGGAVL
GQQPQQPMQHQMLPRGRVYRYPQPRGIPDTSIAYDMGAMQMHQGTPQHSVPVGALASLLA
NASPAEQRMMLGESLYPLVEQLEPESSAKVTGMLLEMDQTEVLHLLESPEALRAKVEEAM
EVLRNVSLQQQAGNPADQLAELSLNDDHVS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggttcaagttcaaacgcagggagtgaattctagtggcaaccaatttgttgtg
ccgatgtcttcgctttatgttggtgatcttgattggaatgtgtctgattctcagttgtat
gatctgtttaatcagattggtcaagtggtttcggttcgtgtttgcagggacttggtcact
ggacgttctcttggttatggttatgtcaattatagcaatccgcaagacgctgttagggca
atggagctgttaaactttactcctcttaatgggaagctcatcaggatagccaagtctctt
cgggacccaactgtacgtaaaagtggatctggaaatatatttattaagaatttggacaag
acaattgaccaaaaagcacttcaagacacattttctacatttgggaatataatctcttgc
aagattgtgactgatgactctggtcaatcaaagggctatggttttgtgcaatatgatagc
gatgaaggtgctcagaaagctattgagcagctgaatggtatgctattgaatgataagcaa
gtatatgtaggacccttcctacgtaagcaggagagggagctggcaacagacaagtcaaaa
ttcactaacgtctatgtgaagaatttagctgaagctacaagtgaagaagacctaaaaaag
atatttggtgaatttggagaaattacaagtgtcgttgtgatgagggatggagacgggaaa
tctaagtgctttggattcattaactttgaagatgcagatgctgctgctagatcagtggag
actcttaatggtaaaaagtttgatcacaaggagtggtacgtcgggaaagctcagaaaaag
tctgagagagagatggaattgaaagttaaatttgagcaaaatttgaaggagacagcagat
aaatcacaagggctgaacttatatgtaaaaaatttggatgatagccttggtgatgataag
ctgaaggaattgttcactccctttggtacaataacatcatgcaaggttatgcgagatcct
actggaacgagtaaaggatcaggatttgttgcattttcaattccagaggaggcatctaga
gcactctcggagatgaatggaaagatggtgtttaacaaacctctttacgttgcacttgca
cagcgtaaagatgatagaagagctagactccaggcacagttctctcagatgcgtcctatt
gcaatggcacctccggttggtccacgtctccctatgtaccctccaggtggtccaggttta
ggacaaatgttctacggacaagcccctcctgctttcattcctccacagcctggttttggg
tatcaacagcaacttattcctggtatgaggccgcctgctggggctccaatgccaaatttt
tttgtgccggtggctcaacacggtcaacgtcccggtggcagacgtggtggagctgttctt
ggccagcaaccacagcagccaatgcaacatcagatgctcccaaggggccgtgtctaccgc
tacccacaacctcgtggaatcccagatactagtatagcatatgatatgggtgctatgcaa
atgcatcagggaactcctcagcattctgttccggttggggccctagcctcacttcttgca
aatgcttcacctgcagagcagcgaatgatgttgggtgaaagtctgtacccactggttgaa
cagctagaacctgaatcttctgcaaaggttactggaatgcttctggaaatggatcagact
gaggtcctgcacttgctagaatcaccagaagctcttagggctaaggtagaggaagctatg
gaggtcctgaggaatgtttctctacagcaacaagctggtaaccccgctgatcaattggca
gagctatcgctaaatgatgaccatgtgtcttaa
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