Apium graveolens (celery): 141707940
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Entry
141707940 CDS
T11340
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141707940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141707940
Enzymes [BR:
agrv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
141707940
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
141707940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Vasculin
Motif
Other DBs
NCBI-GeneID:
141707940
NCBI-ProteinID:
XP_074367493
LinkDB
All DBs
Position
2:complement(156838389..156845658)
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AA seq
724 aa
AA seq
DB search
MMKNQIWTLRPLSQTLTLIHRTFSSLSASTCSSSSSCGIKNVTKSNFDSTLVDLRQHIRA
ADFVAIDLEMTGITSAPWRESFEFDRFDIRYLKVKDSAEKFAVVQLGVCPFRWDSSISSF
VAHPHNFYVFPRQELPVSGPSYEFMCQTASLDFLAKYQFDFNTCINEGISYLSRGQEEEA
QRLFTSLYDYEFLESHSSSNDMKEKGIFRMADVLFTERMKSKISEWKNELLQVKNGDHES
QGSTKESVKQFETIFYMMRPAVKLHGFTSRQLRLIQLVTKNHFKDLAYICVGGEGTSLQQ
LLVYTDSINDKDLLMTEVKGSLHKDTELKIKNAVGLRHVIDLLSSEKKLIVGHNCFLDLA
HLYSKFIAPLPSTGEDYISSIAKYFPHIIDTKLLLNNNDVFQVMKRKRSTSLAKAFAFLC
PEIVSGVKNHRSAYKPCIKVQVQVDDTRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGI
NFESRISYPSLALEEKLQGCINTLYLSWINGDIIDLKTGIRTLESPDSGDHKYRNSKILF
SNIVLLWGFPSKLKAAEIKECILKVFGQSSVTSIYHLDETAVFVLFSKAELVSDFLDLKT
SLEKNNDPISVLHPLSKILDGGCTCAANYEVYKEICGSPFSEMLFTDQAAAIGIKWKTKM
FVPKPEESHQETLVPEGGQTTGSNSPSPKEFEKLVSVLDGLSSRRIAGNGLEDSLHCFQA
HTGS
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagaatcaaatatggacgttgagacccctctcccaaaccctaaccctaattcac
cgaaccttctcttcattatcagcttctacttgcagcagcagcagcagctgtggtattaaa
aatgtgaccaaatcaaactttgattccacgcttgtggacctccgccaacacatccgtgcc
gctgattttgtagcaattgatcttgagatgaccggaatcaccagcgccccctggagagaa
tcattcgagttcgaccgtttcgatatccggtatcttaaagtgaaagactcggcggagaag
tttgctgttgtgcagcttggtgtttgtccttttagatgggactcttccatctcctccttc
gttgcacatccgcacaacttttatgtttttccacgtcaagagcttccagtaagtggtccg
tcttatgaattcatgtgccagacagcgtcacttgatttcttggcaaagtaccagtttgat
tttaatacttgtataaatgaaggaatatcatatttgtccagagggcaagaagaagaagca
cagagattgtttactagtttgtatgattatgagttcctagagtcacattctagttccaat
gatatgaaagagaagggaatatttaggatggctgatgttctttttactgagagaatgaag
agcaaaatcagtgaatggaaaaatgaactattgcaagttaaaaatggggaccatgaaagt
cagggtagcacaaaggaatctgttaaacagtttgaaactattttttacatgatgcgtcca
gcagtcaagctgcatggttttacttcccgccaactcaggttgattcaattggtaactaag
aatcatttcaaagaccttgcttacatttgtgttggtggcgaaggcactagtttgcaacaa
ttacttgtctatacggactctataaatgacaaggatttgctgatgacagaggtaaaaggt
tcccttcataaagatacagagctgaagattaaaaatgctgttggattgcgtcacgtgatt
gatcttctttcttcggaaaagaagttaattgttggtcataattgttttcttgatttagca
catttgtacagcaaatttatagctcctcttccttccactggtgaagactatatttcttcc
attgccaagtacttccctcacataattgacacaaaactactcttgaataataatgatgta
tttcaagttatgaagcggaagagaagtacatcactagccaaagcatttgcttttttatgc
ccagaaattgtgtcaggtgtcaaaaaccatagatcagcatataagccttgcattaaagtg
caggtccaagtagatgatacgaggtcgtctaattggaactctggggccaagcacgaagcc
ggatatgatgcgtttatgactggttgtgtttttgctcaggcatgcagtcatctaggtata
aattttgaatcccgaatatcctatccaagtttagctctggaagagaagcttcaaggttgc
ataaataccctttatcttagttggatcaatggagacattattgatcttaagactggtata
cggacactggagtctccagattccggtgaccacaaataccgcaactcaaagattttattt
tcaaatattgtcttgctgtggggattcccgtctaagctgaaggctgcagaaataaaagaa
tgtatattaaaagtatttgggcaaagttcagttacatccatttaccatttggatgaaact
gcggtgtttgttctgttcagcaaggctgaactcgtgtcagattttttagatttgaagact
tccttagaaaaaaacaatgacccaatctcagttttgcatccactttcaaagattttggat
ggtggatgtacttgtgctgctaattatgaagtttataaagaaatttgcgggtctcctttt
tcggaaatgttatttactgatcaagctgcggcaattggtattaaatggaagaccaagatg
ttcgtacctaaaccagaagaatcgcaccaagaaactttagttccagaaggcggacaaact
acaggttctaattctccaagtccgaaagagtttgaaaaactagttagtgtgcttgatggt
ttatcgagccgccgcattgcaggcaatggacttgaagattccctgcattgtttccaggct
catactggtagttaa
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