Apium graveolens (celery): 141711990
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Entry
141711990 CDS
T11340
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141711990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141711990
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
141711990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_Gbeta
Beta-prop_WDR3_2nd
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_EIPR1
PRP4
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_Vps41
WD_LRWD1
Beta-prop_SCAP
WD40_like
Beta-prop_Nup120_160
Tricorn_2nd
Nbas_N
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
141711990
NCBI-ProteinID:
XP_074370835
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All DBs
Position
3:complement(23113926..23119125)
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AA seq
582 aa
AA seq
DB search
MDIDEDNSVSVAPTEPSPDGQTAASAVPLIPVPVEVVQPAIPPIIPVPVFPVIAPIPPVI
APIPGVTPTIPRTLAPLPPRPPIPRPPQAQNGDIRGSDTDSDQDDSGAQRTTSEYEISEE
SRLVRERQEKAMQEFLLKRRAAALAVPTNDMAVRARLRRLGEPMTLFGEREMERRDRLRT
LMGKLDSEGELEKLMRVHEEEEAAAAVSIADGAEDENVQYPFYTEGPKNLLEARKEIAKY
SLVRASMRLQQAKRKRDDPDEDLDAEVNCALEQAASLNLNCDEIGDDRPLFGCSFSHDGE
MLATCALNGNAKIWSMPQVRRLCTLKGHTVHATDVSFSPINNTLATASADRTAKLWNSEG
VLLRTFEGHLNRLARIAFHPSGKYLGTTSFDKTWRLWDVETGEELLLQEGHSRSVYGLSF
HKDGSLAASCGLDSLARVWDLRTGRSVLALEGHVKPIYGISFSPNGYHLATGGDDNTCRI
WDLRKKKSLYIIPAHSKLISQVKFEPQDGYVLLTASYDMTAKVWSSRDFKPVKTLSGHED
KLSSLDVVADGQYVATVSHDRHIKLWSCRDMEKAAEKGMDID
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggatatagacgaggataactctgtttcagttgcacctacagaaccttctcctgatggt
cagactgctgcttctgcagttccgttaattccggttccagttgaagtggttcaacctgct
attcccccgataattccggttcccgtttttccagttatagctccgataccgccagttata
gctccgataccgggagttactccaacaattccccggacattggcacctcttcctccccgt
cctcccatcccgagaccacctcaagcacaaaacggtgacataaggggcagtgatacagat
tccgatcaggatgattctggagctcaacggaccacttccgagtatgagatctcagaagag
agcagattagttagagaaaggcaggaaaaagctatgcaagaatttttgttgaaaagacgc
gctgctgcccttgcagtgccaaccaatgacatggctgtacgagctcgtctacggcggctt
ggtgaacctatgactttatttggagaaagagagatggaaagacgtgaccgtttgcggacg
ctcatggggaagctggattctgaaggagagttagaaaagctaatgagagttcacgaagag
gaagaagctgctgcagctgtgtcaatagcagatggagcagaagacgaaaatgtccagtat
cctttctatacagaaggcccaaaaaatcttttagaagcccgaaaagaaatcgccaagtat
tctttagtgagagcatctatgcgtcttcaacaagcaaaaagaaaacgggacgatcctgat
gaagatttagatgcagaggttaattgcgctttggagcaagctgcaagtttgaaccttaat
tgtgatgagataggggatgatcggccgctgtttggatgctccttttcacatgacggggag
atgcttgctacctgtgctttaaatggaaatgcaaagatatggagcatgcctcaggtgaga
aggctttgtactttgaaggggcacacagtgcatgctactgatgtttctttttcacccatt
aacaatactttggctactgcatctgctgatcgcacagcaaagttgtggaatagtgaaggc
gtgcttctgagaacttttgagggacatttgaatcgccttgcgcgcattgcattccatcca
tcaggcaagtacttgggtacaactagctttgacaagacctggagattatgggatgttgaa
actggtgaagagctgcttctgcaagaaggtcacagtaggagcgtgtatggactatctttt
cacaaagatggatctctggcagcatcttgtgggcttgattcacttgctcgtgtgtgggac
cttcgcacagggagaagtgttcttgccttggaaggtcatgttaagccaatttatggtata
agtttttctccaaatggctatcacttggctactggtggtgatgataatacctgtcgaata
tgggatctgagaaagaagaaatccctgtacataataccagcacattcaaagcttatatct
caagtcaaatttgagcctcaggatggatacgttctcctaactgcttcttacgatatgaca
gcgaaggtgtggtcatccagagatttcaagcctgtgaagacgctgtctggtcatgaagat
aaactttcatcattggatgtagtagcagatggccagtatgtcgcaacagtttcacatgat
cgtcacatcaagttgtggtcgtgtagagacatggaaaaggctgccgaaaagggtatggac
attgattga
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