Apium graveolens (celery): 141712563
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Entry
141712563 CDS
T11340
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
agrv Apium graveolens (celery)
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agrv03021
]
141712563
03036 Chromosome and associated proteins [BR:
agrv03036
]
141712563
Transcription machinery [BR:
agrv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
141712563
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
141712563
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
HTH_44
Spt6_S1
HHH_9
Tex_central_region
HHH_3
OB_PDCD11
Motif
Other DBs
NCBI-GeneID:
141712563
NCBI-ProteinID:
XP_074371650
LinkDB
All DBs
Position
3:complement(88073490..88083778)
Genome browser
AA seq
2085 aa
AA seq
DB search
MAGKSTVLSDDEDEMEVYDNEEEADVDDDDEDEAGQDEYENDGFIVDDEEQEEGGDSDEE
REKKKKRKKKESQKNYVLDEDDYELLEDNNITGFRRPEESKKFKRLKKAQRDHHSGRGVR
TAEEMLQHSLFGDGAQLEDIEEDEQLEEDDQEIGDEDDMSGFIVEEDLDEHGSPVRRKVT
NKKPRPGVSSAALQEAHEIFGNVDDLLKRRKQGLTEMSGFDDPPGRRKELRNIGGFDPTI
LSEKYMTEKDDIIRNIDFPERLQIFEHTTGPPPTTESSIDEESIWICNQLRNMIHLYGRI
VGTSELPIVKEDVMRFLDFIHIQKLDVSFIAMYRKDECPSLFKDPEQLETDGIQNSCDKK
PALMWHKVLWTIVDLDKKWLLLQKRKSALQSYYKKRYAEESRIIDDETRLILNRQLFDSV
TKSLREAESEREVDDVDLKFNIHFPPGEVGDIDGQYKRPKRKSQYNCCSKAGLWGLASKF
GYSPEQFGLQLSLEKMRMEELLDSKETPEEAASNFICAMFGTPQNVLRGARHMAAVEICC
EPYVRKHVRSIYMDNAVVSTSPTADGNVAINTSHQYARIKWLREKPLAKFTDAQWLLIQK
AEEQKLIKVTIKLPESVLTKMISDSNENYLSDGVSKSAQLWNEQRKLILQDSFFDLLLPS
MEKEARLLLVGRARSWLLLEYGKLLWDRVCVAPYQRKEQNPSSDEETAPRVMACCWGPGK
PATTFVMLDSSGEVLDVLYAGSICNRGQSVNDQQRKKNDQQRVLKFMTEHQPHVVVLGAA
NFSCTRLKEDIYEIIFKMVEHTPRDVGQEMDGISVLYGDEALPHLYEDSRISSDQLPLQP
GIVKRAVALGRYLQNPLAMVATLCGPGKEILSWKLSPLDEFLISDEKFGMIEQIMVDVTN
QVGLDINLALTHEWLFSTMQFISGLGPRKAVSLMRSLVRSGAIFTRKDLLTEHGIGKRVF
INSVGFLRVRRNGMAASSNQFIDLLDDTRIHPESYGLAQELAKDVYLEDIQDETIDDDDE
VLQMAIEHVREKPHLLKSLEVHEYAKSKRSENKIQTLNLIRLELIHGFQDWRKPYAEPSQ
DEEFCMISGETEDSLAEGRTVQATIRRVLPQKAICVLDSGMVGLLAKEDYADDWKELPDL
TEKLNEGDIITCKIKSILKNRYQIFLSCKESEMRNNQYENHQSLDPYYHEDRSSLPVDQD
KVRKQEFGRKHFKPRMIVHPRFQNVTADEAVQFLADKDIGESVVRPSSRGPSFLTLTLKV
YKGIYAHKDILEGGKEHKDIASLLRIGKTLKIGDDTFEDLDEVIDRYVDPLVVQLKVMLN
YRKFKRGTKAEVDELLRIEKAENPMRIVYCFGISHEHPGTCILTYIRSSNPHHEYVGVYP
TGFKFRRKMFGDIDRLVAYFQRHIDDPQKSAQSIRSVAAMVPMGSAATEGQSGGWNDSSN
SGDGWGGQSSDQDQTFTPGSRAGRGDLRNGGSQDGHPSGIPRPNGGRGSGRGRGRGSYDG
SGRGNGRSSNKKDLDSGIQSYGGGDTGGWGGNGGGDDATTGSGGSSGGWGGTSGNDSGGG
SGGGWGGSGGDTAGGWGVSGGDARGGGSGGDTAGGWGGSGGSGVSGGATAGAWGGTGGSG
GTGGVTDGAWGGTGSSGGSGGATGSWGGSGGDTAGGWGGSGGSGGATGSWGGSGGATGAW
GGNGDGSGGTSGGWGKSGGDTGGTAGSWGGSGGDTGSGASGGTTSGWGASGGGGRDSGGW
GGGGAGSGGTTSGWGASGADNGGYGGNSGGGFGGMDSGGSGRGRGRDGRGRGRGRDGRGR
GWGADDESGGSSWGGRRGGGGYRGRGGGGRSWGGTGGSHDVESGGTMGNESGGGSGWGSV
SNSSWGATGTGGGGDKGGGGSGGWGADKDKGSGGGSGSNSIWGATDEGKGGGGGSGWGSG
SNSSLGATGTGGGGDKGVGGRGGWGADKGKGSGGGSGSNSIWGATDEGKGGGGGSGWGSG
SNSSLGATENGGGSGGWGADKDTSSGGGSGSNSSWGGTTGNGRGDDKGGGGSGGWGTDKG
KGGGSDDGGGNGSGWGSGSNSGWGGGNAGSGTSKDVPKSGSSGWG
NT seq
6258 nt
NT seq
+upstream
nt +downstream
nt
atggccgggaaatcgaccgtgctctccgatgatgaagacgagatggaggtgtatgataac
gaagaagaagctgacgtggacgacgatgatgaagacgaggcaggacaggatgaatatgag
aatgatggttttatagtggatgatgaagaacaggaagaaggcggagacagtgatgaggag
agggaaaagaaaaaaaagcgaaagaaaaaggaatcccagaagaactacgttcttgatgaa
gatgactatgagctgcttgaggataataatatcacgggttttcggcgtccagaggaaagc
aaaaagtttaagcgtttgaaaaaagctcagagggatcatcattctgggaggggtgtgcga
acggccgaggagatgctccagcacagcttatttggcgatggagcacaacttgaagacatt
gaagaggatgagcaactagaagaagacgatcaagaaattggagatgaggatgatatgtct
ggctttattgttgaggaagacttggatgagcatggatctcctgtgagaaggaaggtaacc
aataagaagcccaggccaggggtgtcttcagctgcattacaggaagctcatgaaatattt
ggaaatgtggatgatctattaaagcgtcgcaagcaaggattgacagagatgagtggattt
gatgatccacctggaagaagaaaggaactaaggaatatagggggatttgacccaaccatt
ctctcagagaagtatatgacagagaaggatgatattattcgtaacatagattttccggaa
aggttgcagatctttgaacatactactgggcctccaccaacaactgaatcaagtatagat
gaagagagtatttggatttgcaatcagcttagaaacatgattcatttgtatggaagaatt
gttggaactagtgagctgcccatagtcaaagaagatgtgatgagattcttggattttatc
catatccaaaaattagatgtctcttttattgctatgtacagaaaggatgaatgcccgagt
ctgtttaaggatccagagcagcttgaaactgacgggattcaaaatagctgtgacaaaaaa
ccagcattaatgtggcacaaggtactttggactattgtggatttggataagaaatggttg
cttctccagaaaagaaagagtgctttacagtcatactacaagaagagatatgctgaggag
tcccgaatcatagatgatgaaaccaggctcatcttgaatcgacaattgtttgattcagtc
actaagtctcttagggaagctgagtcggaacgagaggttgatgacgtggacttgaagttt
aatattcactttccacccggagaggttggtgacattgatgggcagtataagaggccaaag
cggaaatcacagtacaattgttgcagtaaggcagggttgtgggggctagccagtaagttt
ggctatagcccggagcaatttgggctgcagttatctctggagaaaatgagaatggaggag
ctgttggatagcaaggaaactccagaagaagcggcttcaaattttatatgtgccatgttt
ggaacaccgcagaatgttcttagaggtgctcggcacatggcagctgttgagatttgctgc
gaaccctatgtgcgcaaacatgtgcggagcatttatatggataatgcagtagtgtcaaca
agtccaactgcagatggaaatgtcgctataaatacatctcatcagtatgctagaataaaa
tggttacgggaaaagcctcttgcaaaatttacggatgcacagtggcttctaattcaaaag
gctgaagagcagaagcttatcaaagttacaattaagcttccagaatctgtcttaaccaaa
atgattagcgactcaaatgagaattatcttagtgatggagtaagcaaatctgctcaatta
tggaatgaacagaggaagctgatactgcaggattccttttttgatctcctcctaccttca
atggagaaagaagcaagattgttgctggttggcagagcaagaagttggttacttctggaa
tatggaaagctgttgtgggacagagtttgtgtggcgccatatcagaggaaggaacagaat
ccgagctctgatgaagaaactgcacccagagttatggcttgctgttggggtccgggaaag
cctgcaactacatttgtgatgctggattcatctggagaagtgttggatgttctgtatgct
gggtccatttgcaaccgtggtcaaagtgttaacgatcaacagcgtaaaaagaatgaccag
cagagagttttgaagttcatgactgaacatcaaccacatgttgtcgttctcggagctgcg
aatttttcttgtacacgtttaaaggaagatatttatgagattattttcaagatggtggag
catactcctagagatgtaggccaagaaatggatggtataagcgttttatatggcgatgaa
gctcttcctcacctttatgaggattctcgtatctcttcagatcagcttcctttgcagcca
ggcattgtcaagcgagccgtggctctaggtcgttatcttcaaaatccactagcaatggtt
gcaacactgtgtggaccagggaaagaaatattatcttggaagcttagtcctttggatgaa
tttctaatttctgatgagaagtttgggatgattgaacagatcatggtagacgtaactaat
caagtcgggcttgacattaatttggcattaacccatgaatggttattttctaccatgcag
tttatctcagggcttggtcccagaaaggcagtatctttgatgaggtctctagtaagaagt
ggagctatttttacaaggaaagacttgttgacagaacatggtattggtaagagggttttt
atcaattcagttggtttcttacgagtccggagaaatggaatggctgcttctagtaatcaa
tttattgatctgttggatgatacgagaattcatccagaatcttacggtcttgcgcaagaa
cttgcaaaagatgtatatctcgaagatattcaagatgaaacaattgatgatgatgatgaa
gtgttgcagatggcaattgagcatgtcagagaaaaaccacacctgttgaagtccctcgag
gtgcatgaatatgctaaatcaaagcggtcagagaataaaattcaaaccctaaatttaata
aggttggagttaattcatggatttcaagattggcgaaagccatatgcagagccaagccaa
gatgaggaattctgcatgatatcaggggagaccgaagatagtcttgctgagggaagaact
gtgcaggcaacaattcgcagggtgctaccccagaaagctatatgtgttctcgactctggg
atggtaggtttacttgccaaggaagattatgcagacgattggaaggagttgcctgattta
actgaaaagttgaatgaaggtgatatcataacctgcaaaatcaaatcgattttgaagaac
aggtaccagatattcttaagttgcaaggaaagtgaaatgaggaacaaccaatatgagaat
caccaaagtcttgacccatactatcacgaggatcgtagcagtttaccagtggatcaagac
aaagtgcgcaagcaggagtttggaagaaagcattttaagccacgaatgatagttcatcct
cgctttcagaatgttacagctgatgaggcagtccagtttttggctgataaggatatcggt
gagagtgttgtacgcccgagttctcgtggaccctcctttttgactttgacattaaaagtc
tacaaaggaatttatgctcacaaggacatacttgaaggtggaaaggaacacaaggacata
gcaagcttgctccgtattggcaaaactttaaaaatcggagatgacacatttgaggatcta
gatgaggttattgatcgttatgttgatccattagtcgttcagctgaaagtgatgcttaac
taccgcaaattcaagagggggactaaagcagaagttgatgagcttttaaggattgagaaa
gccgagaatccaatgagaattgtttattgctttggcatatctcatgaacaccctggaaca
tgtattctgacgtatataaggagttcaaatccgcatcacgaatatgttggtgtgtaccca
actggatttaaatttcgcaggaaaatgttcggggacattgatcggctcgttgcatatttc
cagagacatattgatgatccacaaaagtcggcacagtcaattcgatctgttgctgcaatg
gttccaatgggaagtgctgcaacggaggggcaatctggtggctggaatgattctagtaac
agtggtgatggttggggaggccagtcttcagaccaagaccaaaccttcactccggggtct
agagcaggcagaggtgacttgagaaatggtggcagtcaggatggacatccaagtggtatt
cctaggccaaatggtggacggggaagtggtcggggacgtggtaggggatcttatgatggt
agcggaagaggtaatggtcgaagcagcaacaaaaaagacttggatagtgggattcagagt
tacggtggtggtgatactggtggctggggaggaaatggcggtggagatgatgctactact
ggtagtggtggaagtagtggtggctggggtggaaccagtggcaatgatagtggtggcgga
agtggtggtggttggggaggaagtgggggtgatactgctggtggttggggagtaagtggg
ggcgatgctcgtggaggtggaagtggtggtgatactgctggtggttggggaggaagtggc
gggagtggagtaagtggtggcgctactgctggtgcttggggaggaaccggcggcagtgga
ggaactggtggtgttactgatggtgcttggggaggaaccggcagtagtggaggaagtggt
ggtgctactggttcttggggaggaagtggcggtgatactgctggtggttggggaggaagt
ggtggcagtggtggtgctactggttcttggggaggaagtggtggtgctaccggtgcttgg
ggaggaaatggtgacggtagtggtggaacttctggtggttgggggaaaagtggtggtgat
actggtggcactgctggtagctggggaggaagcggtggtgacactggtagtggagcaagt
ggtggtactaccagtggttggggagcaagtggcggtggtggtagggacagtggtggatgg
gggggaggtggtgcaggtagtggtggtactaccagtggttggggagcaagtggtgctgat
aatggtggttatggaggtaatagcggtggcggttttggaggtatggatagtggaggcagt
ggtagaggcaggggacgtgatggtagaggtcgaggcaggggacgtgatggtagaggtcgt
ggttggggggcagacgatgaaagtggaggtagcagttggggaggtaggagaggtggtggt
ggctatagaggtaggggaggtggtggtagaagttggggaggtacaggtggcagtcatgat
gttgaaagtggaggtaccatgggtaatgagagtggtggaggtagtggttggggtagtgtg
agcaatagcagctggggagctactggaactggtggtggaggggacaaaggtggtggtggc
agtggaggctggggagctgataaggataaaggtagtggtggaggcagtggcagcaatagc
atctggggagctactgatgagggtaaaggtggtggtggaggcagtggttggggcagcggc
agcaatagcagcttgggagctactggaactggcggtggaggggacaaaggtgttggtggc
cgtggaggctggggagctgataagggtaaaggtagtggtggaggcagtggcagcaatagc
atctggggagctactgatgagggtaaaggtggtggtggaggcagtggttggggcagcggc
agcaatagcagcttgggagctactgaaaatggtggtggcagtggaggttggggagctgat
aaggatacaagtagtggtggaggcagtggcagcaatagcagctggggaggaactactgga
aatggcaggggagatgataaaggcggtggtggcagtggtggttggggaactgataagggt
aaaggtggtggcagtgatgatgggggtggcaatggaagtggttggggtagtggcagcaat
agcggctggggtggtggaaatgcaggttctggtactagtaaagatgttccaaaatcagga
agttcaggctgggggtag
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integrated database retrieval system
