Apium graveolens (celery): 141713658
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Entry
141713658 CDS
T11340
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
agrv Apium graveolens (celery)
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141713658
03041 Spliceosome [BR:
agrv03041
]
141713658
03036 Chromosome and associated proteins [BR:
agrv03036
]
141713658
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141713658
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141713658
mRNA cycle factors
Common to processing body (P body) and stress granule
141713658
Spliceosome [BR:
agrv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
141713658
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
141713658
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
141713658
NCBI-ProteinID:
XP_074373268
LinkDB
All DBs
Position
3:complement(295201263..295205646)
Genome browser
AA seq
623 aa
AA seq
DB search
MYATDSYTTSPQTRRSRPSRSTYLPPHLRTTNTHSTFSDHNPNSFIPDSPSHRFTPSRGR
ASLRGRGRGRGRARTYLPHTRPTFHPNPNPNPFEIFEKFDDLEISDSEEEKTGINFDVYN
DIPVEATGSDIPEPANSFNEIDLGQALNENIRRCKYNKPTPVQRYAIPVVMAGRDLMACA
QTGSGKTAAFCFPIISGILKYCNVGSSVDYSGVVSPFALILSPTRELSCQIHEEARKFSY
ETGIKVAVAYGGTPIAHQLHKLEKGVDILVATPGRLLDMIERAKISLKKIKYLALDEADR
MLDMGFERQIRKVVEQMGMPPPGVRQTMLFSATFPNEIQRLATDFLSNYIFLTVGKVGSS
TELIAQRVEFVQDINKRDRLMNLLVEQSAKENNDRRALTLIFVETKRGADSMEGWLCRNG
FLATAIHGDKAQMERERALRSFKTGARPILVATDVAARGLDVPHVTHVINYDLPKDIDDY
VHRIGRTGRAGKSGLATAFFCDRNSPLAKSLVQLMQEAKQQVPSWLTQYAETSASHGSSR
SYRHGGSKFGGHDFRSATKMGGGSDYYSTAYSNQAPFGEPCRAPSGAFTSYYGSDAAFPV
DAYTAGAYGYPYNHGSLVAGAWN
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcgactgattcatacactacgagtccccaaacacggcgcagtcgtccaagccga
tccacctacctccctccacatctccgcaccacaaacacacactccacattctccgatcac
aaccctaactcgttcatccctgactcacctagtcaccgattcacaccgagtcgaggccga
gcctctctccgaggtcgcggccgtggccgcgggcgagcccgcacctatctcccccacacc
cgacccacatttcacccaaaccctaacccgaacccgttcgaaatcttcgaaaaattcgac
gatctcgaaatctccgactcagaagaagaaaaaaccggaataaacttcgacgtttataac
gacattccggtcgaagcaaccggttcagacatacctgaaccggcaaattcattcaacgag
attgatttaggccaagctttaaatgagaatataaggaggtgtaagtataataaaccaact
ccggttcagcgttatgctattccggttgtgatggctgggagagatttaatggcttgtgct
cagaccggttcaggcaaaacggcagcgttttgttttcctattataagtgggattcttaag
tactgtaatgtgggtagtagtgtggattattcaggggtggtttctccttttgctcttatt
ttgtctccaactagagagttatcttgtcagattcatgaggaggctaggaagttttcgtat
gagactgggattaaagttgctgttgcttatgggggaacacccattgctcaccagctgcat
aaattggaaaagggtgttgacatcttagttgctactcctggccgcctgctggatatgatt
gaaagagcaaaaatatctctgaagaagattaagtatttagctttggatgaagctgatcgg
atgttagacatgggttttgagcgacaaatccgaaaagttgttgagcaaatggggatgcct
ccaccaggagtaaggcagacaatgcttttcagtgcaacttttccaaatgagatccaaagg
cttgccacagatttcctctcaaactacatatttttgactgttggaaaagttggttctagc
acagagctgattgctcaaagagttgagtttgtccaagacataaacaaaagagatcgtttg
atgaatctccttgttgagcaaagtgcaaaagaaaataatgacaggcgtgctttgacattg
atctttgtggagaccaagaggggagctgattcaatggaaggctggttgtgcagaaatggt
tttctagcaacagctatacatggtgacaaagctcagatggagagagaacgtgctttgaga
tctttcaaaactggagcaaggcctattttggtagcgacagatgttgctgctagaggacta
gatgttccacatgttacccatgtcattaactatgacttgccaaaggacatagatgattat
gtgcatcggattggcagaacaggcagagctggtaagtctgggttggcaacagcatttttt
tgtgacaggaactcgcccctggcaaagtcacttgtgcagctcatgcaggaagcaaaacaa
caagttccttcatggctcactcaatatgctgagacatctgcatctcatggtagttccagg
tcctaccgacatggaggcagcaagtttggtggccatgatttcagaagtgcaacaaaaatg
ggcggtggcagtgattattattcaactgcctactccaatcaagctccttttggtgaacct
tgcagagctccttctggtgcattcacttcttactatggttctgacgccgcttttcctgtt
gatgcctacaccgctggtgcatatggatatccatataatcacggttctcttgttgctggt
gcttggaattaa
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