Apium graveolens (celery): 141713849
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Entry
141713849 CDS
T11340
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141713849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141713849
03009 Ribosome biogenesis [BR:
agrv03009
]
141713849
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141713849
Spliceosome [BR:
agrv03041
]
Complex A
U2 snRNP components
U2 related factors
141713849
Complex B
141713849
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
141713849
Ribosome biogenesis [BR:
agrv03009
]
Eukaryotic type
90S particles
Helicases
141713849
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
DEAD
AAA_22
Helicase_C
AAA_19
ResIII
SRP54
Flavi_DEAD
nSTAND3
ABC_tran
NB-ARC
AAA_7
T2SSE
ATPase
Cas3-like_C_2
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
141713849
NCBI-ProteinID:
XP_074373518
LinkDB
All DBs
Position
3
Genome browser
AA seq
743 aa
AA seq
DB search
MVIFMFPMVILYFDGGDFIFDSGDFLKVAGIGGGRKWWLSVIGGGGRCVTSLINRWNGRA
YTQRYYDILEKRKSLPVWHQKLEFLKAFKDNQTLILVGETGSGKTTQIPQFVLETVELES
RNKYMIACTQPRRVAAMSVARRVAEEMDVCIGEQVGYSIRFEDCTSSQTVLKYLTDGMLL
REAMTDPLLKRYNVIILDEAHERTLSTDVLLGLLKQVLKNRPDLKLVVMSATLEAEKFQG
YFCGAPLMKVPGRLHPVEIFYTQKNEDDYVKAAIHTVVQIHTCQPPGDILVFLTGEEEIE
DACRKIKKEIGKFGDSVGPALVVPLYSTLPPAMQQKIFDPAPSPLMPNGPAGRKIVVSTN
IAETSLTTDGIVYVIDPGFAKRKVYDPRTRVESLQVAAISKASAHQRSGRAGRTQPGKCF
RLYTEKSFLNYLEPETCPEIQSSNIAITMLTLKKIGIDDLVHFDFMDPPAPETLMRALEL
LNYLGALDDEGNLTRLGEIMSELPLDPQMGKMLVVSPEFNCSNEILSICAMLSVPNCFLR
PREAQKAADEAKARFAHIDGDHLTLLNVYHDYKQNNDDQSWCYENFVNYRVLKSADHVRQ
QLACIMARFNLKLRSTDFNSRHYYINIKKAMLSGYFTQVAHLERTGDYLTVKDNRVVHLH
PSNCLGHKPEWVIYKEHVFTSKDFLRTVTDVCGEWLIDIAPHYFDLVNFPHCEAKRVLEK
LYKKMEREQRYKDQKVEGIIDHR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggtgatttttatgtttccgatggtgattttatattttgatggtggtgattttatattt
gacagtggtgattttctgaaggtcgccggaattggtggtggccggaaatggtggttgtcg
gtgattggaggaggtggtaggtgtgtgacttctttgattaatcggtggaatggaagggct
tatacgcaaagatattatgatattttggagaagaggaaaagtttgcctgtttggcaccag
aaattagagtttctaaaggctttcaaggataatcagacgctgattcttgttggggagact
gggagtgggaaaactactcagattcctcagtttgttcttgaaactgtcgaattagaaagc
cgtaacaagtacatgattgcatgcacccagcctcggagggttgcagcaatgtcggttgct
cgtagagttgctgaagagatggatgtatgtattggagaacaagttggttatagcattcgt
tttgaagactgcactagttcgcaaactgttctgaagtacttgacagatggtatgctttta
agagaagccatgactgatccacttttgaagagatataatgtgatcattcttgatgaagct
catgaaaggactttgtcaacagatgttctgttagggcttttgaagcaagtactgaaaaat
aggcctgatttgaagcttgttgtgatgagtgctactctcgaggctgaaaagtttcagggt
tatttctgtggtgcaccccttatgaaggttccaggaagactacacccggtggagatcttt
tatacgcagaagaacgaggatgactatgtaaaagcagcaattcatactgttgttcaaata
catacatgtcaaccccctggtgatatactagtctttcttaccggggaggaggaaattgaa
gatgcgtgtcgtaaaataaaaaaggaaatcggtaagtttggagattctgttggacctgca
ttagttgtgcctttatactccacgcttcctccagctatgcagcagaaaatatttgatcct
gctccttctcctttgatgccaaatggtccggctggaaggaagattgttgtctctacaaac
attgctgaaacgtctctgacaacagatggcatagtttatgtcatagatcctggatttgca
aaaagaaaagtttatgacccacgaacacgtgttgagtctttgcaggttgcagcaatatca
aaggcaagtgcccatcagaggtcagggcgtgcaggcagaacgcaaccaggaaagtgtttt
agattatacacggagaaaagttttcttaattatcttgagcctgagacatgccctgagatt
cagagttcaaacattgcaataacgatgctcactttgaaaaaaataggtatagatgatctg
gtccattttgattttatggaccctcctgcccctgaaacactaatgcgtgcattagagctt
ttgaattacttgggggctttggatgatgaaggaaatttgaccaggctgggtgaaatcatg
agtgaattgcccctagacccgcagatggggaagatgcttgttgtcagcccagaattcaac
tgttcgaacgaaattttgtctatatgtgctatgctttcagtacccaattgctttctccgg
cctagggaggctcagaaagctgcagatgaagctaaagctcggtttgcgcacatagatggg
gatcatctcacacttttaaatgtgtaccatgattacaaacaaaacaatgacgaccaatca
tggtgttatgagaattttgtcaactacagggtactcaaatctgcagatcatgtgaggcag
cagctagcttgcatcatggctaggttcaatttaaaactccgcagcacagacttcaacagc
cgacactattacatcaacataaaaaaggccatgttatcgggatatttcactcaggtggct
cacctggagcgtactggagactatttaaccgtcaaagataaccgagtggttcatctacac
ccatcaaactgccttggtcacaaaccagagtgggtaatttataaggagcatgtcttcaca
tcaaaggattttctccgcacagtaacagatgtttgtggcgaatggttgattgatattgct
ccacattacttcgatcttgttaactttccgcattgtgaagcaaagcgcgttcttgaaaag
ttatacaaaaagatggagcgagagcagagatacaaagaccaaaaggtagaaggtatcatt
gatcaccgatga
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