Apium graveolens (celery): 141716620
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Entry
141716620 CDS
T11340
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
agrv Apium graveolens (celery)
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
agrv03009
]
141716620
Ribosome biogenesis [BR:
agrv03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
141716620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_IP5PC_F
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_HPS5
VPS8_N
Beta-prop_SCAP
WDR54
Beta-prop_DCAF4
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
141716620
NCBI-ProteinID:
XP_074374908
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Position
4:6398714..6402766
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AA seq
482 aa
AA seq
DB search
MQDSLAETEAKGDKMKEGLLVCGDRNLGVGLTIWDIETGDRFLHIPTCASPRFGVTCLNN
QYLVASQIHRPGCVAGGVIFTWSLNKTQAPLRSYTGEVIGPLCSTKDGIYLAGGAPSGNM
YLWEVTTGKLLKTWHGHNISLTCLVFSDDGSLLISGSEDGMVVVWSMISLLDTMDSESCS
SVLSFLTAHTSSVTGLLTSSCGLNSVFVSSSLDCTCKAWDIFSGTLLQTRTYTIPITVSV
LDPEERQLISGTADGRIFVNTFEVGLLEDPCHNSDDQQIVLKGHRESVTAMTFCGMGLVS
ASEDCTACLWDVVNWVIIRTFEHQKGAISNLLVMPQSSLVPLKSHQRPSNSLRFSLLEKY
SQTSPASNGMATLLPSREHEVVEEYCSTNLLSQQISDLQGDNTAEALQMKVDTNMGNRAW
ITTMTKHTMKMNKQLQVRLLDIAEYRLKELEETESPTEEPKKKKIKENGFLLDAVGGTQC
QG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacagtttagctgagacagaagcaaagggggacaaaatgaaggaaggtctgctg
gtgtgtggtgacaggaatttaggtgttggactcacaatctgggacattgaaactggagat
cggtttctgcacataccaacgtgtgcttctccgcgattcggtgtcacttgtttgaacaat
cagtaccttgttgcttctcagattcataggcctggttgtgttgctggtggtgtcattttt
acctggtccttgaataagactcaggcgccactgcgtagctacacaggggaagttattgga
ccactttgcagcacaaaggatggaatttatcttgcaggtggagctccttcggggaatatg
tatctttgggaggtaacaactgggaaacttctgaagacatggcatggtcataatatatcg
ttgacatgtttggtgttttctgatgacggttccctactcatatctggctctgaagatggg
atggttgttgtctggtcaatgattagtttgctagatacaatggacagtgaaagttgcagt
tctgtactaagttttctgacagcgcatacatcctcggtaactggtctgttaacttcatca
tgcggtttaaattcagttttcgtgtcaagctctcttgattgcacatgcaaggcatgggac
atatttagcgggacacttctacaaactcgaacttatactattcctataactgtaagtgtc
cttgatccagaagagagacaattaatctctggaactgcagatggaaggatttttgtcaac
acatttgaagttggattgctcgaggatccttgccacaattctgatgatcaacaaatagtc
ttaaaagggcacagggaatcagttactgcaatgaccttttgtggaatgggtctcgtatct
gcatctgaggactgcactgcctgcctctgggatgttgtcaattgggtgatcattagaacc
tttgaacatcaaaaaggggccatatccaatctactagtgatgcctcaatcatcactggtt
cctttgaagagccatcaaagaccatccaattccttgcgtttttcattgcttgaaaagtac
tctcaaacatctcccgcgtccaatggaatggccactcttctaccttcacgagaacacgaa
gtcgtggaagaatattgcagcactaatctactaagccaacagatctctgacttacagggg
gacaatacagcagaagcgctgcaaatgaaagtggatacaaacatggggaaccgggcatgg
attacaacaatgacaaagcacacaatgaaaatgaacaagcaattgcaggtaaggttacta
gatattgcagagtatcggcttaaagagctcgaggaaacagaatcgcctacagaggagcca
aagaagaaaaagatcaaggaaaacggttttctgttagacgcagtaggggggacacagtgt
caaggttga
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