Apium graveolens (celery): 141717945
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Entry
141717945 CDS
T11340
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
agrv Apium graveolens (celery)
Pathway
agrv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141717945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141717945
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
141717945
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
LisH_CTF50
WD40_CDC20-Fz
Beta-prop_IFT122_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
WD40_Gbeta
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
CFAP251_N
WDR90_beta-prop_4th
DSE1_N
eIF2A
ASA1
Beta-prop_NOL10_N
Beta-prop_SCAP
Beta-prop_DCAF4
Cytochrom_D1
Ge1_WD40
Beta-prop_NWD2_C
Beta-prop_VPS8
PAC11
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
141717945
NCBI-ProteinID:
XP_074376325
LinkDB
All DBs
Position
4
Genome browser
AA seq
442 aa
AA seq
DB search
MDNNNNNNSMLEQTLQDGKLVRLLNCLIVAHLRHNNLTQAATAVASATMTPLNTQAPPNK
LIQLVAKGLAAENNHVLGGISSFGLDSSVAGTALYASVSDPCTTVVDFSAVHDTKGASKF
FPKHETRHISEHKNVATCARFSPDGKFVATGSADMSIKLFEVAKIKQSMQPDSREGSSRP
VIRTFYDHLQPINDLDFHPQNNVLISGAKDHTIRFFDFSKTVAKRAFKVIQDTHNVRSVS
FHPSGDFILAGTDHPIPHLYDVNTFHCYVSANVLESNANGAINQVRYSSTGGMYVTASKD
GSIKLWDGVTASCVRSIGGAHGTAEATSANFTKDQRFVLSCGKDSSVKLWEIGTGKLVKQ
YVGATHTQWRCQAVFNDTEEFVLCVDEQSNEIVIWDALTTEKVARWPSNHNGKPRWLDHS
PTEAAFISCGIDRSIRFWKETV
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggataataataataataacaacagcatgttagagcagacattgcaagatgggaaactt
gttcgtttgcttaattgtttgattgttgcacatcttcgtcacaacaatcttacccaggct
gctactgctgttgcttccgctactatgactccccttaatactcaagctccccctaacaag
ctaatacaacttgttgctaagggtcttgcagcagaaaacaatcatgtcttgggaggcatt
tcttcttttgggttggattcaagtgttgctggaactgcactatatgcctccgtttcagat
ccttgcactacagtcgtggatttcagtgctgtacatgatacaaaaggtgcatcaaaattt
tttccaaagcatgagacccggcatatttcagagcataagaatgttgccacatgtgcaaga
tttagtccagatgggaagtttgttgcaactggaagtgcagatatgtctataaagctcttt
gaggtagccaaaatcaagcaaagcatgcagccagattcaagagaaggttcttcgcgacct
gtcatacggacgttttatgaccatctacaaccaataaatgatttggatttccatcctcaa
aataatgttttaatatcgggcgccaaagatcatacaatacggttcttcgatttttccaaa
accgttgcaaaaagggcattcaaagttatacaggatacccacaatgttcgatcggtgtct
tttcacccctcgggagactttattttagcaggaactgatcatccaattccacacttgtat
gatgtaaacacttttcattgttacgtatcagcaaatgtcctggagagtaatgctaatgga
gcaattaatcaggtaaggtactcgtctactggtggcatgtatgtcactgcctcaaaagat
ggttccattaagctctgggatggtgtaactgctagttgtgttcgttctattggcggtgcc
catggaacagcagaggccactagtgcaaattttacgaaggatcagagatttgtcctctct
tgtggtaaggactcatcagtgaaactttgggaaattggcaccggaaagttggttaaacaa
tatgtaggagccacccatacgcagtggagatgccaggctgtttttaatgacactgaagag
tttgtactgtgtgttgatgaacagagtaatgagattgtcatctgggacgctctaacaaca
gagaaagtagcaagatggccgtccaaccataacgggaaaccccgatggcttgaccactca
ccaacagaggcagcattcatttcttgtggcatagacaggtcaataaggttttggaaggaa
actgtgtag
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