KEGG   Apium graveolens (celery): 141717952
Entry
141717952         CDS       T11340                                 
Name
(RefSeq) pre-mRNA-splicing factor SPF27 homolog isoform X1
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    141717952
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:agrv03041]
    141717952
   03400 DNA repair and recombination proteins [BR:agrv03400]
    141717952
Spliceosome [BR:agrv03041]
 Complex B
  Other components
   Prp19 complex
    141717952
 Complex C
   Prp19-CDC5 complex
    141717952
DNA repair and recombination proteins [BR:agrv03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    141717952
SSDB
Motif
Pfam: BCAS2 Trehalose_PPase
Other DBs
NCBI-GeneID: 141717952
NCBI-ProteinID: XP_074376355
LinkDB
Position
4:42331736..42334435
AA seq 250 aa
MANNTHGDVVLMLEAPPSSRPSWWSGGDVIDALPYIDDEYVKEEVDLLIQNEMRMSSKKP
SDFLKQLPPIPPFNLQNHPLLAREFERVRASKPPVPLDMSRYGLEMPSANKRNDEAAWNQ
ALQKAQRLLQHQVIRLENLELMSKHGADVWIQHNQRLEAMLSRVQAEALQIRKEIDGVNL
ERKKHQFWNYQQKTADELNVLSAQWRELCEKNIEIEAACATMGIHIEELKKEAAERGWDL
EAKMDFMPVS
NT seq 753 nt   +upstreamnt  +downstreamnt
atggcgaacaacacccacggcgacgtagtactaatgctggaagcacctccgtcaagtcgt
ccgtcgtggtggagcggcggcgacgtaatagacgcactcccttacatcgacgatgaatac
gtgaaagaagaagtggatcttttgattcaaaacgagatgcgaatgagctccaaaaaaccc
tccgattttctcaaacaactccctcccatcccccccttcaatctccagaatcatccactg
cttgccagggaatttgaaagagttagagcttcaaagccacctgtacctctagatatgtca
cggtatggcctggaaatgccatctgctaacaaaaggaatgatgaggctgcttggaatcag
gctcttcaaaaagctcaacgtttgcttcagcatcaggtgatcaggctagaaaatctcgaa
ttgatgtcaaaacatggcgctgatgtctggatacaacacaaccaacgcctagaagcgatg
ttatcaagagtgcaagcagaagctcttcagatacggaaagagatagatggtgtgaattta
gaaaggaaaaaacatcagttctggaattatcagcaaaaaactgcggacgagcttaatgtt
ttatcagcacaatggagggagctttgtgagaaaaatatagaaatcgaagctgcatgtgct
actatgggaattcatattgaagaactgaagaaagaagccgcagaaaggggctgggatctg
gaggccaagatggatttcatgcctgtttcttaa

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