Apium graveolens (celery): 141720483
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Entry
141720483 CDS
T11340
Name
(RefSeq) protein RRP6-like 1 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141720483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141720483
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
141720483
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
DUF4794
WHD_ORC
Motif
Other DBs
NCBI-GeneID:
141720483
NCBI-ProteinID:
XP_074379018
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All DBs
Position
4:187299870..187311428
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AA seq
894 aa
AA seq
DB search
MDKKITDPLSSSIEKLSGSSSAIPSDKDFRFLYNFDDFKTPIKEIGEKSQSMIEKSSAQL
GKYDSDHGDGSNWLQNVNDEILGQLDCSLDEYKKMKKSENDDDNDGFQLVCGKKKKGGCS
ENVKKGDQGSGALDVKVLSKDKKSSGMKPRVPFHIPSIPKPQDEYKIMVNNYNQPFEHVW
LERSEDGTRLIHPLEKYSASEFVDKKIIDIQPAKPAPVESSPYKLVEEVKDLKELAAKLK
GVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRVQIGPYLREIFKDPTKKKV
MHGADRDIIWLQRDFGIYVCNLFDTGQASKVLKLERHSLEYLLNHFCGVAANKEYQNADW
RLRPLTKEMLRYAREDTHYLLHIYDLMRVRLLCPSNGSEYSESALLEVYERSYDICMQLY
EKDVMTDSSFLYIYGLQDANLNAQQLAVVAGLCEWRDAVARIEDESTGYILPNKTLLEIA
KQMPLTTSSLHQLVKLKHQYVERHLDSVVSIIKYSIQNASAYEAIAEQLKEAYIEATTAG
NLTVADGSEVLSPPDVPARSKGRIGGALVGATNTLSKNMFKNLAQLKERSSDLKNSFHEV
INEQPEGPYFSAGHYRDEQTDKDSCVPRLPKESSRTSEPLIPGNMKFPYLASGAEVNVQV
LRKSTSAFGALLGNLAAKRKFDAEKIVTEEVKLENNKSSVNLPFHSFSGKANRLHPAVKE
SAKLLQISRPKEPDTVVATDSRLQGTIFLNEKLSEQQVHEDLKPEQNLSNMSASFFELDE
GDETVSLSDLSSSFKKCFQSAQKERKATQVRKSQEPVQQFKPFDYEAARKQAGFGDNRRR
NIKEDGENRTKHTENMKNNLIKAHTEGGEESGGFQLGRRRQAFPPTATRSATFH
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggacaagaagatcacagaccccctctcttcttcaattgaaaaactctcaggttcttct
agtgccattccctctgacaaagattttcgctttttgtacaattttgatgattttaaaacc
ccaattaaagaaattggggagaaatctcagtctatgattgagaaatcatcagcccaattg
gggaaatatgacagtgatcatggcgatgggtctaattggttacagaatgtgaatgatgaa
atcttgggtcagcttgattgttcattagatgagtataagaagatgaaaaagagtgagaat
gatgatgataatgatgggtttcaattggtttgtggaaagaagaagaagggaggctgtagt
gagaatgtgaagaaaggggatcagggttctggggcattggatgttaaggtgctttcgaaa
gataagaaaagctcgggtatgaagccgagagttccatttcatatacctagtattcctaag
ccacaggatgagtataagattatggttaataactataatcaaccttttgagcatgtttgg
ttggagagaagtgaagatgggaccaggttaattcatccattggaaaaatattctgcctct
gaatttgttgataagaaaatcattgatattcagccagcaaaacctgctccggtagagagt
tctccctacaagctcgtggaagaagttaaagatttgaaagagttagctgcaaagttaaag
ggtgtcaatgagtttgcggttgatttggaacataatcagtatcgatcttttcaaggattg
acttgcctcatgcaaatatctaccagaactgaggatttcgttgtggatacactaaagctt
cgagttcaaattggtccttatctaagggaaatttttaaggatcctactaagaaaaaggtc
atgcatggagctgatcgggatatcatatggcttcaaagggattttggcatatatgtctgc
aatttgtttgacactggacaggcctcaaaggtattaaagttggagagacatagtttggaa
tatcttctgaatcacttttgtggagtagcagcaaacaaagaataccagaatgcagattgg
agactacgtcctcttacaaaagaaatgctaagatatgctagggaagatacacactatctg
ttgcatatctatgatctgatgagagtccgtttgctctgtccgtctaacggctctgagtat
tctgaaagtgcccttttagaggtatacgagcgcagttatgatatatgcatgcagctttac
gagaaagatgtcatgacggacagctcttttctctacatatatgggttacaggatgctaat
ctaaatgctcaacaacttgcagttgttgctgggctctgtgaatggagagatgctgttgcc
cgtatcgaagatgaaagtactggttatatattgccaaataaaactctgcttgaaattgct
aaacagatgcctctaacaacgagtagcctacaccaattggtgaaattaaagcatcagtat
gttgaacgccatcttgattccgtggttagcatcatcaagtattccattcaaaatgcctct
gcctatgaagctattgctgaacaacttaaggaggcatacatagaggcaacaactgctggg
aacttgactgttgctgatggatctgaagtgttgtctccccctgatgttccagcgaggtcc
aaaggaagaatcggaggagcacttgtgggggcaactaatacattaagtaaaaatatgttt
aaaaaccttgcacaactcaaggagaggagttcggaccttaaaaacagttttcatgaggta
attaatgagcagcctgaggggccttattttagtgctggtcattatagggatgaacaaact
gacaaagatagttgtgtacctagactaccaaaagagagctccagaacttctgaaccgctt
ataccaggaaacatgaagtttccatatctggcatctggagctgaagtaaatgttcaagtg
ctgagaaaatcaactagtgcttttggggccttgctaggaaatttagctgctaagagaaaa
tttgatgcagaaaaaatagtaacggaagaggtcaagttggagaacaataaatcttcagtg
aaccttccttttcattcattctcaggcaaagctaataggctgcatccggctgtaaaagaa
tctgctaaactcctacagatctcacgtcctaaagaacctgatactgtagtagctactgat
tctcgtttgcaaggtacaatatttttgaatgaaaaattaagcgagcaacaagtacacgag
gaccttaagccagagcagaatttaagcaacatgtctgcatctttttttgaattggacgag
ggtgatgagacagtgtcgctatctgatctatcttccagtttcaaaaagtgcttccaatca
gcacagaaagaaagaaaagcaacacaagtgcggaagtctcaagaacctgtacagcagttt
aaaccttttgattatgaagcagcaaggaaacaggctggatttggagataataggaggaga
aacatcaaagaggatggtgagaaccggactaagcatacggagaatatgaaaaataattta
attaaagctcacacggagggaggtgaggagagtggaggttttcaactaggcaggaggcgc
caggcttttcccccaactgcgactcgcagtgcaactttccattag
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