Apium graveolens (celery): 141720558
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Entry
141720558 CDS
T11340
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
agrv Apium graveolens (celery)
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141720558
03041 Spliceosome [BR:
agrv03041
]
141720558
03036 Chromosome and associated proteins [BR:
agrv03036
]
141720558
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141720558
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141720558
mRNA cycle factors
Common to processing body (P body) and stress granule
141720558
Spliceosome [BR:
agrv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
141720558
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
141720558
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
141720558
NCBI-ProteinID:
XP_074379140
LinkDB
All DBs
Position
4:202588322..202592540
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AA seq
629 aa
AA seq
DB search
MSYNHRYNNNNDSSSYPPLPTRLHPHQPNYSTSRPTTRPHDQPPSRPHTNQQHNTFDLPA
NLNLLNLSDNSDVINFDAYEDIPVETTGSDIPPPVNTFAEIRLGKSLDDNIRRCKYVKPT
PIQRHAIPVALAGRDLMACAQTGSGKTAAFCFPIISGILKHNGTTPFGGSRRLRVACPLA
LIMSPTRELSCQIHDEAKKFSYQTGVKVGVAYGGAPINRQLQNLEKGVDILVATPGRLVD
MIERERISLKRIKYLALDEADRMLDMGFERQIRQIVEEMGMPPPGVRQTLLFSATFPTEI
QKLASDFLSNYIFLSVGRVGSSTDLIDQRVELVQDMDKRSLLMNILKDQRSNGMDGKLAL
TLVFVETKRGADALEYWLCRNGYSATAIHGDKVQMERERALRSFKNGSTPILVATDVAAR
GLDVPHVTHVINFDLPKDIDDYVHRIGRTGRAGKSGLATAFFSEKNSALAKALAQLMQES
NQQVPSWLTQYAEKSSPYGNSRSYRGGSKFGGHDFRSSSKQYGSGSSNYSNYGSGSSNYS
NYGSGSSHNNYVSGYNDYNASNGPADYKYSDYSGTNPGDSTYSGYSGNDFAAAGVDAYSG
NEFAAAAGVDTYAGSAPAYLSDIVATGWD
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcttataaccaccgttacaacaacaacaatgactcttcttcttaccctccattacca
actcgactccatccacaccaacccaactactccactagtcgacccaccactaggccccac
gatcaaccccctagcaggccccacacaaaccaacaacacaacacgttcgatctccccgcc
aacctaaacctactcaacctttcagacaactcagacgtcatcaacttcgacgcctacgaa
gacatccctgtcgaaacaaccggttcagacattccaccaccagtaaacacatttgctgag
attcgcttaggaaagtctttagatgacaacataagaagatgtaagtatgtcaaacccact
cctattcagcgtcacgccattcctgttgctttagctggacgtgacttgatggcatgtgct
cagactggctctggcaaaacggctgcgttttgtttccccatcattagtggaatcttgaag
cacaatggaacgacgccgtttgggggttccaggaggttgagggttgcgtgtccgcttgct
cttattatgtctcctactagggaactttcttgtcagatacatgatgaagcaaagaaattt
tcttaccagactggtgttaaggttggggttgcgtatggcggggcaccaatcaatcgtcag
ttgcaaaatcttgagaagggagttgatatcttagtcgccactcctggtcgtttagttgat
atgattgaaagagagagaatctctctcaaaaggatcaagtatttggctttggatgaggct
gatcgaatgttggacatgggatttgaacgacagattcgtcaaattgttgaagaaatgggg
atgcctccgcctggtgtgaggcaaactttgctctttagtgcaacatttccgactgagatc
cagaagcttgcatcggattttctatcgaactatatatttttaagtgtgggaagagttggc
tcgagtacagatctgattgatcaaagagttgagcttgttcaagatatggataaaagaagt
ctattgatgaatatactcaaggatcagaggtcaaatggcatggatggcaagcttgctttg
acattagtttttgtggagacaaaaaggggagcagatgcacttgaatactggttgtgcagg
aatggatactcagctacggcaattcatggtgacaaagtccaaatggaaagagaacgggca
ttgagatcattcaaaaatgggtcgactcctattttggttgctactgatgttgctgcaaga
ggtctagatgttccccatgtcacccatgttatcaacttcgatttaccgaaggacatagat
gattatgttcatagaattggaagaacaggcagagctggcaagtctggactggcaacagca
ttctttagtgagaaaaattccgctctagctaaggcacttgctcagttgatgcaagaatcc
aatcaacaagttccttcttggcttactcaatatgcagagaaatcctcaccttatggtaat
agccgttcataccgtggaggtagcaagtttggtggtcatgacttcagaagttcatcaaaa
caatatggcagtggcagcagcaactacagtaattatggcagtggcagcagcaactacagt
aattatggcagtggcagcagccacaataattatgtcagtggctacaatgattataatgca
agcaatggtcctgcggattacaagtattctgattattctggtacaaaccctggtgactct
acatattctggttactctggcaatgactttgctgctgctggtgtggatgcttactccgga
aatgaatttgctgctgcagctggtgttgatacttatgcaggcagtgcaccagcatatctg
tctgacattgttgctactggctgggattaa
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