Apium graveolens (celery): 141720711
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Entry
141720711 CDS
T11340
Name
(RefSeq) RNA-dependent RNA polymerase 6-like
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
agrv Apium graveolens (celery)
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
agrv03036
]
141720711
Enzymes [BR:
agrv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
141720711
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
141720711
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RdRP
RDR6_2nd
RdRP_head
RBD_RDR6
RdRP_helical
PH_RDR2
COX4
ZnuA
SPCC191_01
Motif
Other DBs
NCBI-GeneID:
141720711
NCBI-ProteinID:
XP_074379403
LinkDB
All DBs
Position
4:237933907..237939267
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AA seq
1198 aa
AA seq
DB search
MGSEESEREVVVTQISVGGFDYSVTAKTLLDYFEENVGIVWRCRLKTSSTPFETYPEFAI
DTTKLKRLDSYDNVIPHAFVHFAIPDSARSALDAAGCGELILGYNPLKISLGPGNPHRMN
QSRRDKAPFKLPDVRIEIGSWVSKDKFFVGWRGPPTGVDFLVDPFDATCKFVFTMDTAFS
FLGTRNHTVIKCNFKVEFLVRDIQWMKNYSDTSHLILLLHLDSSPKLYYRTADDDIEESV
PFDILDDDDPWIRTTDFTRSGAIGRCNIYRMLIQPRHGLKLRKAMQYLKEQRVSIRDLQT
QLTIQDEPDFGMPLPDPLFCIHFKEGINFKTLFLVNAVLHKGIFSQHTLSDQFFNLLKSQ
KEEVNIAALKHICSTKRPYFNACERMKNVQDWLLKNPKLLRTRELDDIVEVRRLIITPTR
AYCLPPEVELSNRVLRHYKSVADRFIRVTFMDDGMQTLNKNVVTYYPAPIVRDITSNVNA
QKTLVFKRMKDIIIDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVLDVSNWMGRF
TNKNVAKCAARMGLCFSSTYATVDVPHDHVDSELADIMRNGYDFSDGIGKISHDLAMEVA
QRLQLNVSPPCAYQIRYGGCKGVVACWPASKSGIHLSLRSSMNKFVSNHTILEICSWTRY
QPGFLNRQIITLLSALNVSDKVFWDMQESMISKLNQMLVSADIAFDVVTSSCAEEGNTAA
IMLSAGFKPQNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILEQGQCF
VQVSNPSLENCFVKHGSEFSETKRDLQVIKGLVVVAKNPCLHPGDVRILEAVDVPSLHHL
YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLVPPGKASWPAMDYTPAEAKELKRD
VNLKDVSDFFARNMVNESLGTICNAHVVHADSSDYGAMDENCHVLAELAAKAVDFPKTGK
IINMPSHLKPKLYPDFMGKEDFQSYKSTKILGRLYRKIKDNYEIDLTDSMEINFLPREIP
YDTDLETPGSTTFINDAWGIKCSYDEQLNSLLGQYKVNKEEEVVTGHIWSMPKNSSKKQG
ELKERLKNAYNALKKEFRRVFEHMGADFDDLSNDEKNAAYEHKASAWYQVTYHPEWVKMS
LDLQDPDANDKETVMLSFPWIAADYLVRIKIRRGGMKDASTQPNKPINSLARYLSGKI
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggggtctgaagaaagtgaaagagaagtggtagttactcaaatcagtgttggtggattt
gattattcggtaactgcaaagacccttctggattactttgaagaaaatgtggggattgtt
tggagatgtagattaaagacctcttcgacaccttttgaaacgtatccagagtttgcaatt
gacactacaaaacttaaaagattagattcgtacgataatgtgatcccacatgcatttgtg
cattttgcaattcctgattcagcaagatcagctctcgatgctgctgggtgtggagagctt
atactgggatataatcctttaaagattagtttagggcctggaaatccacatcgcatgaat
cagagcaggagagacaaggcgccctttaaattaccagatgtccgtattgagattggaagc
tgggttagcaaagataagttttttgttggttggagaggcccgcctactggtgtagatttt
cttgtggacccctttgatgcaacttgcaagttcgtttttacaatggacactgctttttct
ttcctgggtacacgaaaccatactgtaataaagtgtaattttaaggttgagttcttggtc
agagacatacaatggatgaaaaattatagtgatacatcacacttaattttattgctgcat
ttggattcctctccaaagctgtactatagaactgcagatgatgatatcgaagaatcagtt
ccatttgatattttggatgatgatgatccttggattcggaccacagattttactaggagc
ggtgctatcgggcggtgtaatatatatcgaatgctgatccaaccacgccatggcttgaag
ttgaggaaggctatgcaatacctgaaagagcaaagggtttctatcagagatttgcagaca
caacttactatacaagatgaacctgactttggaatgccgttgcctgatccattattttgt
atacactttaaggaaggtattaactttaaaaccttgtttttggtgaatgctgtactgcat
aaaggcatattcagtcagcacacattgtcagatcagttctttaatttattaaaatcccaa
aaggaggaagtaaatattgccgcactgaaacatatatgttccaccaagcgtccttatttt
aatgcatgtgaaaggatgaaaaatgttcaggattggttgttgaaaaatcctaagctctta
agaaccagagagttggatgatattgttgaagttagaaggttaatcatcaccccgacaaga
gcttactgtcttccaccagaagttgaactttctaatagggttcttaggcactataaatca
gttgctgatcgatttatacgggttacctttatggatgatggcatgcagacactaaataag
aatgttgtcacctactatcctgctcctattgtgagagacatcacatcaaatgtgaatgcc
caaaaaaccttagtgtttaaaaggatgaaggatataataattgatggattccatttatgt
ggtcggaagtactcttttttggccttctcagctaatcaactaagggatcggtctgcctgg
ttttttgctggggaccagaacacttctgtgcttgatgtttcgaattggatgggccgcttc
accaacaagaatgttgcaaagtgtgctgctagaatgggcctgtgcttctcttctacttat
gcaactgttgatgttcctcatgaccacgtagattctgagcttgcagatatcatgaggaat
ggatatgatttttctgatggaattggcaagatatcacatgatcttgcaatggaagttgca
cagagattgcaattgaatgtaagccctccgtgtgcctatcagatacgatatggtggctgc
aaaggtgttgttgcctgttggccagccagtaaaagtgggatccatctttctttgaggtca
agcatgaacaagtttgtgtccaaccacactattcttgaaatctgttcttggactcgttat
cagcctgggttcttaaataggcagattataaccttactttcagctttgaacgtcagtgat
aaagtattttgggatatgcaggagtcaatgatatctaaactaaatcagatgcttgtaagt
gcagacatagctttcgatgttgttacttcctcgtgtgctgaagaaggaaacacggctgct
ataatgttaagtgctggtttcaagcctcaaaatgaacctcatttaagaggcatgctaaca
agtataagagctgcacagtttggggacctcagagaaaaggctaggatttatgtttcttca
ggaaggtggttaatggggtgtctggatgagctagcaatacttgaacaaggccagtgcttt
gttcaagtgtcaaatccttcacttgaaaactgctttgtgaaacatggttcagagttttcg
gagacaaaaagagatttacaagtaattaagggccttgttgtggtggcaaagaacccctgt
ctacatcctggagatgtgcgcattctagaggcggtagatgttcccagcttgcatcatctt
tatgattgcctggtatttccgcaaaaaggagatcgacctcatacaaatgaagcgtctgga
agtgaccttgatggcgatctttactttgtcacttgggatgagaatcttgttccgcctggt
aaagcgagctggccagcaatggattacacccctgcagaagccaaagagttgaagcgagat
gttaaccttaaggacgtttcagatttcttcgctagaaacatggtcaatgaaagcctaggt
accatctgcaatgcccatgtggttcatgctgatagcagcgattatggagcaatggatgag
aactgccatgttctagcagagcttgcagccaaagcagttgatttcccaaaaactggaaaa
attataaacatgccatctcatctaaaacccaaattgtacccagactttatgggaaaagag
gattttcagtcatacaaatctactaaaatattaggcaggctttatcgcaaaatcaaagat
aattatgaaattgatttgacagattctatggagattaattttcttcctagagaaattcct
tatgacacggatctcgagacaccaggatcgacaactttcatcaatgatgcatggggaatt
aagtgctcttacgatgaacagttaaatagccttctaggacagtataaggtcaacaaggaa
gaagaggttgtaacgggacacatttggtctatgccaaaaaatagtagtaagaagcaaggt
gaactaaaagagagacttaaaaatgcgtacaacgctttgaaaaaggagttcaggagggtc
tttgagcatatgggtgctgattttgatgacctttcaaatgatgaaaagaatgcagcatat
gaacacaaggcatcagcatggtaccaggtaacttaccatcccgaatgggtgaagatgtca
ctggacttgcaagaccctgatgctaatgacaaggagactgtaatgttaagcttcccttgg
atagcagctgactaccttgtacggatcaaaataaggcgtggaggaatgaaagatgccagt
actcaacccaacaagccaatcaattctctagcaaggtacctttcaggtaagatatga
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